Pseudoliparis swirei (Mariana hadal snailfish): 130213413
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Entry
130213413 CDS
T09868
Symbol
cicb
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130213413 (cicb)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130213413 (cicb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_Cic_C
DUF4819
HMG_box
HMG_box_2
DUF3915
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
130213413
NCBI-ProteinID:
XP_056300991
LinkDB
All DBs
Position
22:15575231..15613419
Genome browser
AA seq
2712 aa
AA seq
DB search
MHKFQPAVERREGTGEKETRERHTKKECLKREAKTTKLHFVNGEEEMRPLKKHRGRGGRR
RGGSQPLEEKDPKRVKRETLVNAAQHTPSAPARKQIPHTAVNSHQEPIRSSGPPAREEPT
ELRKPVESPEREGKKAEEKTEKEKMVGSNGNKTVSTGTAALPPSTPMPLSTAKPPLATSH
PPSGGSVSSRKTATFKARIPKKKYTYEHFANNASSLTTITTSSPALIHNSYCNIHSRISD
SFNAPNNNDKSSNNISKSTNKSTTSNIDRSTKSSTTSGINTVTHHSAGSHTTLVNSSNSR
NNNCSGNQPSVLIVDSKAPEATHLVSGGDKPLGRATSQESEGSSNSVRSSSTETASEHSA
DLDGMEATGPSLHPKNSCYSAPLHNSHHKEARRSEGLAKALAKGMKNQRVLARQVKRPME
GGVKEIDSCLSPVFRPGVVRRVSGGTVEVQLQGEETLVEYPFHGGSVTASSSGPESPVEF
ILDATPPGLAPVAVRTRVCVPFGGEEGGPLLYREGVVTQVDPHPGVSFPYQVLLSEDRET
LDNADVGEEKANANSQAVWVSRQSLRLLTPPWEVPHLDGGMAQEREREREREERERREEM
EVEREVCQLSIGMGVLGGGARLGHAFSHEGVAGGHPYGNAHPPSPSSTVTSGTVLSGRER
QDQPTTPEEDVEVSRFNMELAAGPKTSARTSKHRNIVSKSSCYPPSSPHLSAVPGPGPPQ
PPRSPALAGSDTNNTTPSLPPSKSTPTQTPPPTSGGGSSAASSRSRTPLALAQQKYKKGD
VVCTPNGIRKKFNGKQWRRLCSREGCMKESQRRGYCSRHLSMRSKEMEAPGGGGGGSSSG
TVTPDLRGRASSEFEWDDTSRESSETSSRGDSRPRLVLPSLLPHDLSSRFDFDECEAATM
LVSLGSSRSCTPSFSPISTQSPFSPAPSPSPSPLFGFRPANFSPISASPVLQHRRHRQPS
GTGGGGAGASKVPTPAGGGGGERERHSSGIQSSFHSNLMFTVPMSPSKRKPDALPPPPLP
SHHHDTKTELEQGDLSSSFRVLSPQTPASHSRTHTPTFSRPRGVSTPSSTAVSPPPLLAS
PTPPSPLTPDGAPRRVVPVSQQALRDSPVIVRNPECPLERGGGNEGGTDATSSKDVGLAP
LTPQPASGLQVPVPINAAAATVPNGAVLLRSPAQTLVLVSPTPSSLPTAATPATLHALSV
SVGTTVPAPVPSSTDSPAGREENRGAGFGGEVQQPVPCHPSPTALLPLILPVESLHPAPR
KDIIMGRPGTVWTNVEPRSVPVFPWHSLVPFLAPTQSDASCQPGEGQYPVHHPQAAILKT
ECQGVAALSQQPAEAPPTVERGPPPRPPPSSDELPPEKEKGDAERERPDSETESDADDIF
FPVVVPEKPVPTPPVKRRTQSLSALPKDGDKSSPGKREKDHIRRPMNAFMIFSKRHRALV
HQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSS
SEGRGVPGGKDIRERSMSESTEPRSVELKGVGPSLVSVSERTTGEGHVGQLTRPRAFSQS
AMHSLERSDRGNTQALAELAQMCGDGGSQFSSHAPPPSQSQRGVSEDMTSDEERMVICEE
EGDDDVIEEPYPSSSIDLKCKERVTDSDSENGSGDESDRKRVFAPVICSSALPSSSHHTP
HGRSISLSSYPSSKCYDEGRSGGGFSDHRRKERGEGETKDTFGGEGGGEGGKGVQATSLS
LTSGHSVISTSLAGGHPSSSVGSLGVIPHLGIGVVRVAPTVVTNVMRPVISTPLPIASKT
RDGGTERKSLTLHQQPHLLIGSGSGGGVPATGGGYYSSPAPNPLGAGVGPGGVVTNLVLG
GALSAQPAVQLITPSHHHHLSQHQAFTSSAVSVPHSQPNGPLPLSLLQPQFLPASSLASP
GGKAITQVQYILPTLPANNNPKSPPLQLSQPTSVFNLPTAPPTHMCLANGRQQGTSSLVG
YSSSSAVGVVSPVTRVQTQSPVLQGKMLVPMATVRTAPASAQQVPIVAPLLPVQNGAQTG
SKIIQIAPMTLVQSQLLHGGAVHPASPFPVTVGTAAVMAPGSAPSQAVLLPPAPTRITYV
QSTPGVASALPLVSTTTGSSTTQQALSGPGSAYGPSPLATLGFTAIAPPGQTLVQPLITG
QPPLVATAQAQQPSGPASGSGGQIVTIYSPSPSITMATGVVSMTPVPPSVVYSISGPSTV
SPHILSKHTATPSTIIHPHPDRQADRHLPADRPADRQAERQTELLTHSDRHLERQPSSSC
SSVAPPSGSAVCTRPCSPLPIQTPGSAPGTPKLTQLPVRTPQKVKATLANIPIGSYEGGG
RGKERERERERERERERERERERERVAAATSRFSFDAELAGQTGPPSTHPAEEPSSDRPL
EGPGAAESFDTQHRENTSTKEAGWKESLVSLPPSAPSATEAALPPPHADKDAPPPKKVKA
RPPPLKRTFESVDKSGRVLSEVYFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYR
RKRKNSTDLDSATDEQISPKRKSRRRSSCSSEPNTPKSATKCEGEIFTFDRTAPDGEDIL
TDMEFDKVSYSSLRRTLDHRRALVMQLFQEQGFFPSAQATAAFQTRYCDIFPSKVCLQLK
IREVRQKIMQTAAPSDVSALGIPDSMGPLPGPSGSQSGEGSTRGGGDLQDEDVEEGAEGS
QEDPRDSQDSSR
NT seq
8139 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaattccagcctgcagtagagaggagagaaggaacaggcgagaaggaaacgaga
gaaagacacacaaaaaaggagtgccttaaaagagaagcaaagaccacaaaactgcacttt
gtgaacggcgaagaagagatgagaccgctaaagaaacacagaggtcgaggggggaggagg
agggggggctctcagccccttgaagagaaagaccccaaaagagtcaagagggaaacgctc
gtcaacgccgcacagcacacacccagcgcgcccgcacgcaaacagatcccacacacggcc
gtcaactctcaccaagaaccgatccgaagcagcggtccccccgcgagggaggagcccacc
gagctgaggaaacctgtggagtcaccggagagggaagggaaaaaagcggaagaaaagacc
gaaaaggaaaagatggtgggctcgaatggaaacaagacagtgtccactggcactgcagcg
ctccctccctccaccccaatgccactctccacagccaagccccctctggccaccagtcac
ccccccagtggaggctcagtctccagtcggaaaacagccacatttaaggctcgcataccc
aagaagaaatacacatatgagcactttgcaaacaatgcaagtagcctgactaccattact
acctccagccctgcactcatacacaacagttactgcaatattcacagcagaatcagtgat
agttttaatgcacccaataataatgacaagagtagtaacaatattagtaaaagcacgaat
aaaagcactacttctaatatagataggagtactaaaagtagcaccacaagtggtattaac
accgtgactcatcacagtgctggtagccatactactcttgtcaacagcagtaatagtaga
aataacaattgctcaggtaatcagccatcagtgctaattgtggacagcaaagctccagaa
gcaacgcatttagtttccggaggggataagcccctcgggagagcaacatcccaggagtca
gaggggtcctctaactcagtgcgctcttcgtccactgagactgcaagtgagcactcggct
gacctggacgggatggaagcaacgggaccgagccttcatccaaagaactcctgctactcg
gctcctctccataactcacaccataaagaggccaggcgttcagagggtctcgccaaagct
ctggccaaaggcatgaaaaaccagagagttctcgctcgccaggtaaagaggcccatggag
ggtggggtgaaggagattgactcatgcctttcacccgtgttcagaccaggggtggtgcgt
agggtgagtggagggactgtggaagtccaactccaaggagaggagacgcttgttgaatac
cctttccacggtgggtccgtgacggcgtcgtcatccgggcctgagagccctgtggagttc
attttggacgccacccctcctggcttggcgcctgtggcggtccggacccgggtgtgcgtg
ccctttgggggagaggagggcggtcctctgctgtacagagagggggtcgtcactcaggtg
gacccccaccccggagtgtcctttccttaccaggtgctgctgagtgaagacagagagact
ctggacaatgcagacgtgggggaagagaaagctaatgctaattctcaggccgtgtgggtg
tcccgacaaagtctgaggctgctcacccctccctgggaggtcccacatttggatggtggg
atggcccaggaaagagagcgtgagcgggagagagaggagagggagcggagggaggagatg
gaggtagagagggaagtgtgccagttgagtattgggatgggggtgctgggagggggagcg
cgactaggccatgccttttcacatgaaggagttgcaggagggcatccctatggcaacgca
catccaccatccccttcctccaccgtgacctccggcacagttctctctggcagagagcgg
caggaccagccgaccactccagaggaggacgtcgaggtgtctcgtttcaacatggagctc
gctgccggccccaagacgagcgccaggacctcgaagcacagaaacatcgtctccaagtcc
agctgctacccgccctcttctccccacctctctgcggtgccaggcccgggacccccacag
ccaccccgttcccctgccttagcggggtccgacacgaacaacaccaccccgagcctccct
ccatcaaagtccactcccactcagactcctccccccacttctggtgggggatcctccgct
gcctcctctcgctccaggactcccctcgcattggctcagcagaaatacaagaagggcgat
gtggtgtgcacgccgaacggtatccgcaagaagttcaacggcaagcagtggaggaggctg
tgctccagggagggctgcatgaaggagtctcagcgccggggctactgctcgagacacttg
tccatgaggtccaaggagatggaggcgccagggggagggggagggggcagcagctcgggg
accgtcacccctgacctgcggggcagagcgagcagcgagtttgagtgggacgacacatcc
cgagagagcagcgagaccagcagccgaggagactccaggccccgcctggtcctcccctcc
ctcctcccccacgacctgtcgtcgcgctttgactttgacgagtgcgaggccgccaccatg
ctggtgtcgttgggcagctcccgctcctgcaccccctccttttctcccatctccacccag
tcgcccttctcccctgccccctctccctcgccttcgccgctgttcggcttcaggcccgcc
aatttctccccgattagcgcctccccggtgctgcaacaccggcggcacaggcagcccagc
gggacgggcggaggaggggcaggggccagtaaggtgccaacccccgctggaggaggagga
ggagaacgggagagacactcctcgggtatccagtcctccttccacagcaacctgatgttt
acggtccccatgagccccagcaaacgaaagcctgacgcactccctccaccccccctcccc
tcacaccaccacgacaccaagacggagctggagcagggggacctcagcagctcttttcgg
gtgctgtccccccagacaccggcttcgcattcccgcacgcacacccccaccttctcccga
cccagaggagtctccaccccctcgtccacggctgtctcccctcctcccctgctggcatct
ccaactcccccttccccgctcactcccgatggagcgcctcggcgtgtggtccctgtatcc
cagcaggccttgcgggactctcctgtcattgtgaggaatcctgagtgtcccttagaaaga
ggaggaggaaacgaaggagggacagacgcaacctcatcgaaagacgtcggcttagcaccc
ctcaccccccagccagcgtcaggcctccaggttcccgtccccatcaacgccgctgcagcc
acagtacccaatggcgccgtcctcttgcggagcccggcccaaacgttggtgcttgtgtcc
ccaacaccgtcctccctgcccacagctgccacccccgccaccctgcatgccctgtcagtt
agcgtcggcacaacagtccccgctccggttccgagcagcacggacagccccgcgggccga
gaggagaaccggggggcggggttcgggggtgaggtccagcagccagtcccgtgtcaccct
tcccccaccgctctgctgccgctgatcctgccagttgaaagccttcaccccgctccacgc
aaggacatcatcatgggacgtcctggcacagtatggaccaacgtagagccgcggtcagtt
ccagtcttcccctggcattcattggtccctttcctggcacccactcaatcagatgcttct
tgtcagccaggagagggccagtacccagtccaccacccccaagcagccattctgaagaca
gagtgtcagggggtggcagcgctgtcacagcagcctgcagaggcccctcccactgtagag
agaggtcctccaccgcggcctcccccctcttccgatgagctgcctccagagaaggagaaa
ggagatgcagagagggagaggcctgacagtgagacagagagtgatgcggatgacatcttc
ttcccagtagttgtaccagagaagcccgtccccacgccaccagtgaagagacgcactcag
tccctcagtgcgctgcccaaagatggagataagagcagccctggaaagagggagaaggac
cacatccggcgaccaatgaatgcatttatgattttcagtaagcgccatcgagcattggtg
caccagcggcacccaaaccaggacaacaggacagtcagcaagattcttggggagtggtgg
tatgctcttggaccaaaggagaaacaaaagtaccacgatttggccttccaggtcaaagag
gcccactttaaggctcaccccgactggaagtggtgtaacaaagacaggaagaagtccagc
tcagagggccgtggggtgccagggggcaaagacatcagagagaggagcatgtccgagtcc
acagagccccgctctgtggagctaaagggggttggtccgagtctggtgagcgtgtcagag
aggaccacaggagaaggtcatgtgggccagcttacccgccccagagccttctctcaaagt
gccatgcacagcctggagcggagtgacagggggaatacacaggccctggcagaactggca
cagatgtgtggggatggtggaagtcagttttcaagtcatgccccgcccccctcacagtcc
cagaggggggtcagcgaggacatgaccagtgacgaggagcgcatggtcatctgtgaggag
gagggagatgatgatgttattgaggaaccttatccgagcagctccatagacctcaagtgc
aaggagcgggtgaccgacagcgacagtgagaacggttctggagacgaaagtgatcgaaag
agagtttttgctccagtcatctgctcctctgcattaccatcttcctcccaccatacccct
catggcaggagcatctcactgtcctcttaccccagcagcaagtgttatgatgaggggaga
tcaggaggagggttttcagatcacaggaggaaggaaagaggagagggagagaccaaggac
acatttgggggagaggggggaggagaaggaggaaaaggagtgcaagccacatctctctcc
ctcacttctggccactcagtcatctccacttcgttagctggagggcatccttcctcatca
gtcggctccctgggggtgatcccacatctggggattggagtcgtacgggtggcacctacg
gtggtgaccaatgtcatgcgtcctgtaatcagcacaccactcccgatcgccagcaaaacc
agagatggaggcacagagaggaagtccctgacgctccatcagcagccgcaccttctgatt
ggttcaggatcgggaggaggggttccagccaccgggggtgggtactactcttcaccagca
cctaatcctttaggtgcaggcgttggccctggtggtgtcgtgactaatttggtgttagga
ggggctctgtctgctcaacccgccgtacagctcatcacaccctcccaccaccaccatctc
tcccagcatcaggcctttacctcctccgctgtttcagtaccgcatagccaacccaacggg
cccctgcctctgtccctgcttcagccccagttccttcccgcctcttccctagcgtcccct
gggggtaaggccatcacacaggttcagtacatcctgcccaccctacctgccaacaacaac
cccaagagtccaccgctgcagctcagccagccaaccagtgtcttcaacctgcccacagct
ccacccacacacatgtgcctggccaatggaaggcagcagggcacaagttcactcgtggga
tattcgtccagctcagcagtgggagtggtcagccctgtgacgagagtgcaaacacagtct
ccagtgctccagggcaaaatgcttgttcccatggcaacagtacggacagcaccagcctct
gcccagcaggttcccattgtggcgccgcttcttccggtccagaacggcgctcagacggga
agcaagatcatccaaatcgctccgatgactttggtccagtcccagctgcttcacggtgga
gcggtccaccctgccagccccttccccgtcacagtgggcacagctgctgtgatggctccg
ggatcggccccctcccaggctgtgctgctgccgccagctccgaccaggatcacctatgtc
cagtccactccaggggtcgcatccgctctgcctctggtctccacgacaacaggctcttcc
accacgcagcaagccctgtcggggcctggatctgcatatgggccgtcgcccctggcaaca
ctcggattcacagcaatcgcaccgcctggtcagactctggttcagccgctgatcacaggt
cagcccccactggtagccacagctcaggctcaacagccctcaggccctgcctcgggctct
gggggccagatagtcaccatctactctccttcacccagcatcaccatggcaacaggggtg
gtctctatgacgccggtaccccccagcgtggtctactccatctccggcccttccaccgtt
tccccccacatcctctccaaacacaccgcgacccccagcaccatcatacacccacacccg
gacagacaggcagacaggcacctgcctgcagacagacctgcagacagacaggctgagagg
cagacagaactgctgactcattcggacaggcacctggagaggcagccctccagcagttgc
agctcagtggcacctccaagtggctcagccgtgtgcacacggccctgcagtcctcttccg
atccaaacgcctggcagtgcaccaggtacaccgaaactaacgcagcttccggtcaggacc
cctcagaaggtgaaggcgacgctggcgaacattcccatcggcagctatgaaggaggaggc
cgaggaaaggagagggaacgggaacgggagagagagagggaacgggaaagggagagagag
agggaacgggagagagtagctgcagccaccagtcgcttctcgtttgatgctgagctggcg
gggcagacggggcctccgtcaacccacccggcggaggagccgtcctccgaccgaccgctg
gagggccccggtgctgcggagtccttcgacacgcagcaccgggaaaacacgagcaccaaa
gaggctggctggaaggagtctctcgtctccttgcctcccagcgccccatcagcaacagaa
gcggccctgccccccccacacgccgacaaagatgctcctccgcccaaaaaggtcaaagcc
cgcccaccaccactgaagaggacttttgaatccgtggacaagtcgggcagggtgctgtcg
gaggtgtatttcgaggagcgcttcgctgagctgccagagtttcgacctgaggaggttctg
ccgtcccccaccctgcagagtctggccacttcgccccgggccatcctgggcagctatcgg
cgcaagaggaagaactcgacagatttggactcggccactgacgagcaaatctccccaaag
aggaagagtcggcggcgctcgagctgcagctcggagcccaacacgcctaaaagtgccacc
aagtgtgagggagaaatcttcaccttcgacagaacagccccagacggagaagacatcctg
accgatatggagttcgacaaggtgtcctactcctccctgaggcggacactggaccacagg
cgagcgctggtcatgcagctgttccaggagcagggcttctttccatccgcccaggccacg
gcagccttccagacgaggtactgcgatatattcccttccaaggtgtgtctgcagctgaag
atcagggaggtgcggcagaagatcatgcagacggccgccccctcggatgtctccgcgtta
ggcatccctgactcgatggggcccctccctggaccttctggctcccagtccggggaagga
tccacgaggggaggcggggacctgcaggacgaggacgtggaggaaggggccgagggaagc
caagaggatcctcgggattcacaggactcttcgagatga
DBGET
integrated database retrieval system
