Pseudoliparis swirei (Mariana hadal snailfish): 130213510
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Entry
130213510 CDS
T09868
Symbol
irx2a
Name
(RefSeq) iroquois-class homeodomain protein IRX-2a isoform X1
KO
K24889
iroquois-class homeodomain protein IRX
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130213510 (irx2a)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
130213510 (irx2a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
MRP-S32
Motif
Other DBs
NCBI-GeneID:
130213510
NCBI-ProteinID:
XP_056301174
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Position
22:complement(17367279..17378775)
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AA seq
549 aa
AA seq
DB search
MTNQYKYKSNYSASSITSSRQQGNRCSPLQHIRGVPAPVALKGYLYQPPGSLALYSCPAY
GASALAAPRSEDLARSSSGSAFSPYPGSAAFSASAGAGFSSPLSYSTDPTTGFPSYMSSP
YDAQTSGMAGALSYHPYGSPGYPYQFNDPAYRKNATRDATATLKAWLQEHRKNPYPTKGE
KIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRNKSEDEDEEDGDGERKEVEPSEK
NLENSEASAEDEGISLHVDTLTDHSCSAESDGEKVSCRGGELGSDRAGDKCDEDGEDQNH
EARASISPISVTSSPPLESPLLGHHHHQQHQPPQHHQLHHLHHLHSQREDLARSLINNHI
NTNKSSSGLDSRPSPQNPTVKPKLWSLAEIATSDQKQQHQQPGQNGLPHGPSSSGGLLTP
PASSTTSPAASSPSLYTTPSILGRPIYYTSPFYSNYTNYGNFSPLQGQGILRYTNSSGVS
LAAAAAAAAAAAAANEGLSSSQQTLESSSHPKHRPDSPLVKFNPNQIVVVEQQQQQHFRH
AHLEAKKGT
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaccagtacaagtacaagagcaactacagcgcgagcagcataacatcttcaagg
caacaaggcaaccgatgttctccacttcagcacatcagaggcgtccctgcaccagtcgcc
ctaaagggttacctctaccagcctccgggctcgctggctctttactcgtgtccggcgtac
ggggcctcggctctggctgccccgcgcagtgaagacttggcgaggtcgtcctctggctca
gccttcagtccttacccgggatcggctgcgttctccgcctcggctggtgcaggcttctcc
agtccactgtcatactccacggatccgactacgggattcccatcctacatgagctctcca
tatgacgcgcagacgtcgggcatggcgggggcattaagttaccacccatacgggagtccg
gggtacccttaccaattcaacgacccggcttaccgcaaaaacgccaccagggacgccacg
gccaccctaaaagcctggctgcaggagcacaggaagaacccgtaccccacgaaaggggag
aagatcatgctggccattatcaccaagatgaccctgacgcaggtctccacgtggttcgcc
aacgccaggcggaggctcaagaaggagaacaagatgacctgggcgcccaggaataagagc
gaggacgaggacgaggaggacggggacggggagaggaaagaagtggagccctctgaaaag
aacctggagaacagcgaggcttcagcggaggatgaaggtatcagcctgcacgtcgacacc
ctgacggaccactcctgctcggcggagtctgacggggagaaggtcagctgtcgcgggggc
gagctgggctccgaccgggcaggcgacaaatgcgacgaagacggcgaggaccagaaccac
gaagcgcgagcatcgatctcgcccatatccgtcacgtcgtcgcctccactagaatctcca
ctgcttggtcaccaccaccaccagcagcatcagccgccacagcaccaccagctccatcac
ctccaccatctccacagccagcgcgaggatttggcccggagcctcatcaataaccacatt
aataccaacaaatcgtcttccggcctagatagcagaccttcaccgcagaaccctacggtc
aagcccaaattgtggtcgctggcggaaattgctacctcggaccaaaagcagcaacatcag
caaccggggcagaatgggctaccacatggcccctcctccagcggtggcctcctcaccccc
cctgcgtcttccaccacctccccggctgccagttccccctccctctacacaaccccctcc
atcctcggaagacctatttattacacttctcccttttatagcaattacacaaactatggc
aacttcagccccctgcagggccaagggatcctgcgctatactaattcatccggagtgagt
ctggctgctgctgcggccgccgccgccgccgccgctgcagcaaacgagggtctgagctcc
tctcagcagactctggagtcgagctcacaccccaaacacagaccagactctcccctcgtt
aaatttaacccgaaccagattgttgttgtcgagcagcagcagcagcagcatttcagacac
gcacatttagaagcgaagaaaggtacgtaa
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