KEGG   Pseudomonas sp. W03: SD196_00020
Entry
SD196_00020       CDS       T11012                                 
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
pswo  Pseudomonas sp. W03
Brite
KEGG Orthology (KO) [BR:pswo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pswo03032]
    SD196_00020 (gyrB)
   03400 DNA repair and recombination proteins [BR:pswo03400]
    SD196_00020 (gyrB)
Enzymes [BR:pswo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     SD196_00020 (gyrB)
DNA replication proteins [BR:pswo03032]
 Prokaryotic type
  DNA Topoisomerases
   SD196_00020 (gyrB)
DNA repair and recombination proteins [BR:pswo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SD196_00020 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3 DUF6216 LPD1
Other DBs
NCBI-ProteinID: XOT22636
LinkDB
Position
3755..6172
AA seq 805 aa
MSENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI
SITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSNELRLTIRREGKVWEQVYHHGVPQFPLRPVGDTEGSGTEVHFKPSPDTFHNI
HFSWDILAKRIRELSFLNSGVGIVLRDERTGKEELFKYEGGLRAFVEYLNTNKTAVNQVF
HFNCQREEDGVGVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNYIEQ
EGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFAD
FLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIG
REEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKK
GKQEQYIKDDVAMEEYMTQSALEEASVHVNESAPGLSGEALEKLVNEYRGVMRTLARLSR
LYPQDLTEHFVYLPRIEVEKLGDQAAMQSWLEQYQARLKAVEKSGLVYKVSLREDRERHL
WLPEVEMVAHGLSSYVTFNRDFFASNDYRAVTELGAKLNSLMEEGAYVQKGERKKTVSSF
KEALDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQLFNT
LMGDAVEPRRDFIESNALAVSNLDV
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgagcgagaacacctacgactcttccagcatcaaggtgctgaaggggctggacgccgta
cgcaagcgtccgggcatgtacatcggtgataccgacgacggcaccggcctgcaccacatg
gtcttcgaggtggtggataactcgatcgacgaagcgctggcgggctactgcagcgagatc
agcatcaccattcacaccgatgaatccattaccgtccgcgacaatggccgcggtattccg
gtggatatccacaaggaagaaggggtttccgcagccgaggtcatcatgactgtgctgcac
gccggcggtaagttcgacgacaacagctacaaggtctccggcggcctgcatggtgtaggt
gtgtcggtagtgaacgccctctccaacgaactgcgcctgaccatccgccgcgaaggcaag
gtctgggagcaggtctaccaccacggcgttccgcagttcccgctgcgcccggtgggtgac
accgagggctcgggcaccgaggtgcacttcaagccctcccccgataccttccacaacatc
cacttcagctgggacattctggccaagcggattcgtgagttgtccttcctgaactccggc
gtgggcatcgtcctgcgcgacgagcgcaccggcaaggaagaactgttcaagtacgagggt
ggcctgcgtgccttcgtcgaatacctgaacaccaacaagactgcggtgaaccaggtcttc
cacttcaactgccagcgtgaagaagacggtgtgggcgtggagatcgccctgcagtggaac
gacagcttcaacgagaacatcctctgcttcaccaacaacattccgcagcgtgacggtggt
acccacctggcgggcttccgctccgccctcacccgtcacctgaacaactacatcgagcag
gaaggcctggcgaagaagttcaagatcgccaccaccggtgacgacgcccgtgaaggtctg
accgcgatcatttcggtgaaggtgccggacccgaaattcagctcccagaccaaggacaag
ctggtttcttcggaggtgaagaccgccgtggaacaggaaatgggcaagtacttcgccgac
ttcctgctggagaacccgaacgaagccaaggccgtggtcggcaagatgatcgacgccgcc
cgcgcccgagaggccgcgcgcaaggcccgtgagatgacccgccgcaagggcgcgctggac
atcgccggcctgccgggcaagctcgccgactgccaggagaaggaccccgccctctccgaa
ctgtacatcgtggagggtgactccgcgggcggttctgccaagcagggccgtaaccgcaag
acccaggcgatcctgccgctcaagggcaagatcctcaacgtcgagaaggctcgctttgac
aagatgctgtcctcccaggaggtcggtaccctgatcaccgcgctgggctgcggtatcggt
cgcgaggagtacaacatcgacaagctgcggtaccacaacatcatcatcatgaccgacgct
gacgtcgacggttcgcacatccgtaccctgctgctgaccttcttcttccgtcaactgccc
gagctggtcgagcgcggctacatctatatcgcccagccgccgctgtacaaggtgaagaag
ggcaagcaggagcagtacatcaaggacgacgtggccatggaggaatacatgacccagtcg
gccctcgaggaagccagcgtgcacgtcaacgaaagcgctccgggcctgtccggcgaagcg
ctggagaagctggtcaacgagtaccgcggtgtgatgcgtaccctcgcccgcctgtcccgt
ctgtacccgcaggacctgaccgagcacttcgtctacctgccgcgcatcgaggtggagaag
ctgggtgaccaggccgccatgcagtcctggctggagcagtaccaggcgcgcctgaaggcc
gtcgagaagtccggcctggtctacaaggtcagcctgcgtgaagaccgcgagcgtcacctg
tggctgccggaagtcgagatggtcgcccatggcctgtcgagctacgtcaccttcaaccgt
gacttcttcgccagcaacgattaccgcgcggtaaccgagctgggcgccaagctgaacagc
ctgatggaagaaggcgcctacgtgcagaagggcgagcgcaagaagaccgtatcgagcttc
aaggaagccctggattggctgatggccgaaggcaccaagcgccacagcatccagcgatac
aagggtctgggcgagatgaacccggagcagctgtgggaaaccaccatggacccgaacgtg
cgtcgcatgctgaaggtgaccatcgaggacgccatcgctgccgaccagctgttcaacacc
ctgatgggcgatgccgtggagccgcgccgcgacttcatcgaaagcaatgccctggcggtg
tccaacctggacgtctga

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