Pseudomonas sp. W03: SD196_00020
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Entry
SD196_00020 CDS
T11012
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pswo Pseudomonas sp. W03
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswo03032
]
SD196_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
pswo03400
]
SD196_00020 (gyrB)
Enzymes [BR:
pswo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SD196_00020 (gyrB)
DNA replication proteins [BR:
pswo03032
]
Prokaryotic type
DNA Topoisomerases
SD196_00020 (gyrB)
DNA repair and recombination proteins [BR:
pswo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SD196_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
DUF6216
LPD1
Motif
Other DBs
NCBI-ProteinID:
XOT22636
LinkDB
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Position
3755..6172
Genome browser
AA seq
805 aa
AA seq
DB search
MSENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI
SITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSNELRLTIRREGKVWEQVYHHGVPQFPLRPVGDTEGSGTEVHFKPSPDTFHNI
HFSWDILAKRIRELSFLNSGVGIVLRDERTGKEELFKYEGGLRAFVEYLNTNKTAVNQVF
HFNCQREEDGVGVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNYIEQ
EGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFAD
FLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIG
REEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKK
GKQEQYIKDDVAMEEYMTQSALEEASVHVNESAPGLSGEALEKLVNEYRGVMRTLARLSR
LYPQDLTEHFVYLPRIEVEKLGDQAAMQSWLEQYQARLKAVEKSGLVYKVSLREDRERHL
WLPEVEMVAHGLSSYVTFNRDFFASNDYRAVTELGAKLNSLMEEGAYVQKGERKKTVSSF
KEALDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQLFNT
LMGDAVEPRRDFIESNALAVSNLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaacacctacgactcttccagcatcaaggtgctgaaggggctggacgccgta
cgcaagcgtccgggcatgtacatcggtgataccgacgacggcaccggcctgcaccacatg
gtcttcgaggtggtggataactcgatcgacgaagcgctggcgggctactgcagcgagatc
agcatcaccattcacaccgatgaatccattaccgtccgcgacaatggccgcggtattccg
gtggatatccacaaggaagaaggggtttccgcagccgaggtcatcatgactgtgctgcac
gccggcggtaagttcgacgacaacagctacaaggtctccggcggcctgcatggtgtaggt
gtgtcggtagtgaacgccctctccaacgaactgcgcctgaccatccgccgcgaaggcaag
gtctgggagcaggtctaccaccacggcgttccgcagttcccgctgcgcccggtgggtgac
accgagggctcgggcaccgaggtgcacttcaagccctcccccgataccttccacaacatc
cacttcagctgggacattctggccaagcggattcgtgagttgtccttcctgaactccggc
gtgggcatcgtcctgcgcgacgagcgcaccggcaaggaagaactgttcaagtacgagggt
ggcctgcgtgccttcgtcgaatacctgaacaccaacaagactgcggtgaaccaggtcttc
cacttcaactgccagcgtgaagaagacggtgtgggcgtggagatcgccctgcagtggaac
gacagcttcaacgagaacatcctctgcttcaccaacaacattccgcagcgtgacggtggt
acccacctggcgggcttccgctccgccctcacccgtcacctgaacaactacatcgagcag
gaaggcctggcgaagaagttcaagatcgccaccaccggtgacgacgcccgtgaaggtctg
accgcgatcatttcggtgaaggtgccggacccgaaattcagctcccagaccaaggacaag
ctggtttcttcggaggtgaagaccgccgtggaacaggaaatgggcaagtacttcgccgac
ttcctgctggagaacccgaacgaagccaaggccgtggtcggcaagatgatcgacgccgcc
cgcgcccgagaggccgcgcgcaaggcccgtgagatgacccgccgcaagggcgcgctggac
atcgccggcctgccgggcaagctcgccgactgccaggagaaggaccccgccctctccgaa
ctgtacatcgtggagggtgactccgcgggcggttctgccaagcagggccgtaaccgcaag
acccaggcgatcctgccgctcaagggcaagatcctcaacgtcgagaaggctcgctttgac
aagatgctgtcctcccaggaggtcggtaccctgatcaccgcgctgggctgcggtatcggt
cgcgaggagtacaacatcgacaagctgcggtaccacaacatcatcatcatgaccgacgct
gacgtcgacggttcgcacatccgtaccctgctgctgaccttcttcttccgtcaactgccc
gagctggtcgagcgcggctacatctatatcgcccagccgccgctgtacaaggtgaagaag
ggcaagcaggagcagtacatcaaggacgacgtggccatggaggaatacatgacccagtcg
gccctcgaggaagccagcgtgcacgtcaacgaaagcgctccgggcctgtccggcgaagcg
ctggagaagctggtcaacgagtaccgcggtgtgatgcgtaccctcgcccgcctgtcccgt
ctgtacccgcaggacctgaccgagcacttcgtctacctgccgcgcatcgaggtggagaag
ctgggtgaccaggccgccatgcagtcctggctggagcagtaccaggcgcgcctgaaggcc
gtcgagaagtccggcctggtctacaaggtcagcctgcgtgaagaccgcgagcgtcacctg
tggctgccggaagtcgagatggtcgcccatggcctgtcgagctacgtcaccttcaaccgt
gacttcttcgccagcaacgattaccgcgcggtaaccgagctgggcgccaagctgaacagc
ctgatggaagaaggcgcctacgtgcagaagggcgagcgcaagaagaccgtatcgagcttc
aaggaagccctggattggctgatggccgaaggcaccaagcgccacagcatccagcgatac
aagggtctgggcgagatgaacccggagcagctgtgggaaaccaccatggacccgaacgtg
cgtcgcatgctgaaggtgaccatcgaggacgccatcgctgccgaccagctgttcaacacc
ctgatgggcgatgccgtggagccgcgccgcgacttcatcgaaagcaatgccctggcggtg
tccaacctggacgtctga
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