Pseudomonas sp. W03: SD196_02225
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Entry
SD196_02225 CDS
T11012
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pswo Pseudomonas sp. W03
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswo03009
]
SD196_02225 (dbpA)
Enzymes [BR:
pswo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SD196_02225 (dbpA)
Ribosome biogenesis [BR:
pswo03009
]
Prokaryotic type
rRNA helicases
SD196_02225 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
ERCC3_RAD25_C
SwrA
Motif
Other DBs
NCBI-ProteinID:
XOT23053
LinkDB
All DBs
Position
complement(484334..485710)
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AA seq
458 aa
AA seq
DB search
MTTSAFSSLSLSADLLANLDSLGYREMTPIQAAALPAILKGRDLIAQAKTGSGKTAAFGI
GLLSPLNPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSL
EHGAHVVVGTPGRVQEHLRRETLKLDGLNTLVLDEADRMLDMGFYDSIADIIGQLPTRRQ
TLLFSATYPEGIGQLAAKFLKNPERVEVEALHDDSQIEQHFYEIDPKQRLDAVVRLLQHF
RPQSCVAFCHTRQQCMEVVEQLNARKISALALHGDLEQRERDQVLTMFANRSCSVLVATD
VAARGLDIAALEAVINVELSRDAQVHVHRIGRSGRAGEKGLALSLVTPAEASRAQAIEDL
QGAPLNWERIDFLKANDAPLLPPMTTLAIAGGRKDKLRPGDILGALTGDAGLKGTQVGKI
AIFDFQAFVAVERDVARQALKHFNEGKIKGRSFKARIL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacctccgcattctccagcctttccctgtcggccgacctgctggccaacctcgat
tccctcggctaccgcgagatgaccccgatccaggccgccgccttgcctgcgatcctcaag
ggccgcgacctcatcgcccaggccaagaccggcagcggcaagaccgccgccttcggcatc
ggcctgctcagtccgctgaatccgcgctacttcggctgccaggcgctggtgctgtgcccg
acccgagaactggccgaccaggtggccaaggaaatccgccgcctggcccgcgccgccgac
aacatcaaggtgctgactctctgcggcggcgtgcccttcggcccgcagatcggctcgctg
gaacacggcgcccatgtggtggtcggcactccgggccgggtgcaggagcacctgcgccgc
gagaccctgaaactcgacggcctgaacaccctggtgctggacgaagccgaccgcatgctc
gacatgggcttctacgacagcatcgccgacatcatcggccagctgccgacgcgccgtcag
accctgctgttctccgccacctaccccgaaggcatcgggcaactggcggccaagttcctg
aagaatcccgagcgcgtggaagtggaagcgctgcacgacgacagccagatcgaacagcac
ttctacgagatcgatcctaagcagcgtctcgatgccgtcgtacgcctgcttcagcatttc
cgtccgcagtcctgcgtggccttttgtcatacccgtcagcagtgcatggaagtggtggag
cagctcaacgcccgcaagatttccgccctggccctgcacggcgacctggagcagcgcgag
cgcgaccaggtgctgaccatgttcgccaaccgcagctgcagcgtgctggtggccaccgac
gtagccgcccgcgggctggacatcgccgcgctggaagcggtgatcaacgtcgaactgtcg
cgcgatgcgcaggtccacgtgcaccgcatcggccgtagcggccgcgccggcgagaagggc
ctggcgctgtcgctggtcacccccgcggaggccagccgcgcccaggccatcgaggacctg
cagggcgcgccgctgaactgggagcgcatcgacttcctcaaggccaacgacgccccgctg
ctgccgccgatgaccaccctggccatcgccggcgggcgcaaggacaagctgcgccctggc
gacatcctcggcgcgctgaccggcgacgcgggcctgaaaggtacccaggtcggcaagatc
gccatcttcgacttccaggccttcgtcgccgtggagcgcgacgtcgccaggcaggcgctg
aagcacttcaacgaaggcaagatcaagggccgttcgttcaaggcgcggattctctga
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