Pseudomonas sp. W03: SD196_02530
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Entry
SD196_02530 CDS
T11012
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pswo Pseudomonas sp. W03
Pathway
pswo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SD196_02530 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswo03021
]
SD196_02530 (rpoD)
Transcription machinery [BR:
pswo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SD196_02530 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4472
Motif
Other DBs
NCBI-ProteinID:
XOT23113
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Position
complement(554440..556296)
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AA seq
618 aa
AA seq
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MSGKAQQQSRLKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAETDTDEAAAEEAAAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAQFPGAVDGILEEYNRVVTEGGRLSDVLSGYIDPDDGSLPAEEV
EPVDLKDDSADAKAKDDEEDEEGDGESSDDDEGDGGPDPEEAARRFGAVSEQLDKAKKAL
KKHGRGSKQASEELLALAELFMPIKLVPKQFDVLVAKVRDSLDSVRRQERAIMQLCVRDA
RMPRADFLRQFPGHETDTAWVDTVLKGKPKYAEAIERLKDDILRNQQKLVDLEASSQLTV
AEIKDVNRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVA
TSESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEHLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtctcaaagagttgatcacccgtggtcgtgag
cagggctacctgacttacgcagaggtcaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagaca
gccccggatgcggatgccctgttgctggcggagaccgataccgacgaagccgccgccgaa
gaagccgcagccgccctggccgcggtggagagcgacgtcggccgcacgaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtgatgagcgccatcgcccagttcccg
ggcgcggtggacggcatcctcgaagaatacaaccgcgtggtcaccgaaggcggtcgcctg
tccgacgtcctgagcggctacatcgaccccgatgacggcagcctgccggccgaggaagtc
gagcctgtcgacctgaaagacgacagcgccgatgcaaaggccaaggacgacgaagaagac
gaagaaggcgacggcgaaagctccgacgacgacgaaggcgatggcggtccggacccggaa
gaagccgcccgtcgtttcggtgcagtctccgagcagctggacaaggccaagaaggctctg
aagaagcacggccgcggcagcaagcaggccagcgaggaactgctcgccctggccgaactg
ttcatgccgatcaagctggtgcccaagcagttcgacgtactggtcgccaaggtccgtgat
tcgctggacagcgtccgtcgtcaggaacgcgccatcatgcagctgtgcgtgcgtgatgcc
cgcatgccgcgtgccgatttcctgcgccagttccccggccacgaaaccgacaccgcctgg
gtcgacaccgtactcaagggcaagcccaagtacgccgaggccatcgagcgtctgaaagac
gacatcctgcgcaaccagcagaagctggtcgacctggaggccagctcgcagctgaccgtt
gccgagatcaaggacgtcaaccgtgccatgtccatcggcgaggccaaagcccgccgcgcc
aagaaggaaatggtcgaggcgaacctgcgtctggtgatctccatcgccaagaagtacacc
aaccgcggcctgcaattcctcgacctgatccaggaaggcaacatcggcctgatgaaggcg
gtggacaagttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggatt
cgccaggcgatcacccgttcgatcgccgaccaggcccgcaccatccgtatcccggtgcac
atgatcgagaccatcaacaagctcaaccgtatctcccgccagatgctgcaggaaatgggc
cgtgaaccgaccccggaagagctgggcgaacgcatggacatgccggaagacaagatccgc
aaggtcctgaagatcgccaaggaaccgatctccatggaaacgccgatcggtgacgacgaa
gattcgcacctgggcgacttcatcgaggactccaccatgcagtcgccgatcgaagtggcg
accagcgagagcctcaaggaagccacccgcgaagtcctcgccggcctcaccgctcgcgaa
gccaaggtcctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaa
gtcggcaagcagttcgatgtaacccgtgagcgtatccgccagatcgaagccaaggcgctg
cgcaagctgcgccacccgtcgcgaagcgagcatctacgctccttcctcgacgagtaa
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