Pseudomonas sp. W03: SD196_03810
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Entry
SD196_03810 CDS
T11012
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pswo Pseudomonas sp. W03
Pathway
pswo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD196_03810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswo03019
]
SD196_03810
Enzymes [BR:
pswo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SD196_03810
Messenger RNA biogenesis [BR:
pswo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD196_03810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
XOT23348
LinkDB
All DBs
Position
799148..800533
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AA seq
461 aa
AA seq
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MTFATLGLIDPLLRALDGLGYQNPTAVQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPLL
QKLLQEGPQVAANSIRALVLVPTRELAEQVHESFRAYGQHVPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQNALKFTQLQALVLDEADRMLDLGFARELDEVFAALPKRR
QTLLFSATFSDAIRQMARNLLRDPLTIDVAPRNTAARTVKQHLVTVDKKRKAELFLHLLR
EQGWRQALVFAKTRKGVDELVGLLQQEGIRADSIHGDKPQPARLRALARFKAGEVDFLIA
TDVAARGLDIEEMPLVVNFDLPIVPEDYVHRIGRTGRAGATGQAISLVCADEVQQLAAIE
TLIGQTLQRRGEDGFEPDHRVPVTAPGGQVLKKPKKPKQPKVPDGKQGKVHLGSLLDDKP
QVKAVRKAPGFGLGGKPAGGKPAGGKSSSGKPGGGKGGRRP
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgccaccctcggcctgatcgatcctctcctgcgcgccctcgacgggctcggc
taccagaacccgacggcggtgcaggcccaggccatcccggccgtgctcaaggggcgcgac
ctgctggccgccgcccagaccggcaccggcaagaccgccggcttcgccctgccgctgctg
cagaagctgttgcaggaaggcccgcaggtggcggccaactccattcgcgcgctggtgctg
gtgccgacccgcgagctggcggagcaggtgcacgagagcttccgcgcctacggccagcac
gtgccgctgcgcaccgccgtggcctacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcgtcgacgtgctggtggcgactcccggccgcctgctcgacctctatcgg
cagaacgccctgaagttcacccagctccaggccctggtgctggacgaagccgaccgcatg
ctcgacctgggcttcgcccgcgagttggatgaagtcttcgccgcgctgcccaagcgccgg
cagacgctgctgttctccgcgaccttctccgacgccatccgccagatggcgcgcaatctg
ctgcgcgacccgctgaccatcgacgtggcgccgcgcaacacggcggccaggacggtgaag
cagcatctggtcacggtggacaagaagcgcaaggctgaactcttcctgcacctgctgcgc
gagcagggttggcgccaggcgctggtgttcgccaagacccgcaagggggtcgacgaactg
gtcggcctgttgcagcaggagggcatacgcgccgactcgatccacggcgacaagccgcag
ccggcgcgcctgcgcgccctggcgcggttcaaggccggcgaggtggacttcctgatcgcc
accgacgtcgccgcccgcggcctggacatcgaggagatgccgctggtggtcaacttcgac
ctgcccatcgtccccgaggactacgtgcaccgcatcggccgtactggccgcgccggcgcc
acggggcaggcgatctcgctggtctgtgctgacgaagtacagcaactggcggccatcgag
acgctgatcggccagacccttcagcgccgcggcgaggacggcttcgagcccgaccaccgg
gtgccggtcaccgcgccgggcggccaggtgctgaagaagccgaagaagcccaagcaaccc
aaggtgccggacggcaagcagggcaaggtgcacctgggctcgctgctggatgacaagccg
caggtcaaggcggtgcgcaaggcgccggggttcgggctcggtggcaaaccggcaggcggc
aagcccgccggtggcaagtcgtcttctggcaagccgggtggcggcaagggcggtcgccgc
ccgtga
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