Pseudomonas sp. W03: SD196_04040
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Entry
SD196_04040 CDS
T11012
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pswo Pseudomonas sp. W03
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswo03000
]
SD196_04040
Transcription factors [BR:
pswo03000
]
Prokaryotic type
Helix-turn-helix
Other families
SD196_04040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
PAS_4
Diguanyl_cycl_sensor
PAS_9
AAA_5
PAS_8
PAS
HTH_30
HTH_23
HTH_7
HTH_26
HTH_22
AAA_2
AAA
Phage_CP76
HTH_20
Mg_chelatase
HTH_50
HTH_AraC
HTH_17
HTH_28
HTH_32
HVO_A0261_N
HTH_11
HTH_IclR
HTH_29
HTH_Tnp_ISL3
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
XOT23392
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Position
850807..852723
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AA seq
638 aa
AA seq
DB search
MRANDMSRHARQVMTVAEGRARAGAPGADPSIARSWMRCLEQYHLDPAQTMAPTVLEHAR
MLERRERLQQVLEIASGEMNSLHQQLSGAGHAVLLTDSRGVILNCVSEAAERRTFEQAGL
WLGADWSEAREGTNGIGTCLVERQALTIHQDEHFRSRHTGLTCSASPVFDPQGELLAVLD
VSSARRDASRQSQFHTMALVNLSAKAIEGCYFLRHFEDQWLLRFHLQPDGLGLFSEGMLA
FDGNGRIQAANQSAINLLGSHRESLLGRSLEQFFDCRLDDLFNRADPQPNASWPLRTHSG
RTLYALLRGQRPVPAAPVLPRAPLAKGLCIDDPQLAHDFRRALKVYAHDVPLLLQGETGT
GKEAFARAVHQGGERAGKSFVALNCAAIPESLIESELFGYRGGSFTGARKEGMRGKLQQA
DGGTLFLDEIGDMPLALQTRLLRVLEERQVVPIGGEPQDVDIRLISASHRDLEALVASGQ
FREDLYYRLNGLVVALPPLRERADRDALLDHLLAEESKGRAVRLEADVRRHLLDYPWPGN
VRQLRNVLRTLCALCEGGRIQMADLPPDLRRAPAPAAVATPVVASEEGGDALGNAERLAL
LEVLEAHHWHVSRVAQQLGISRNTLYRKLNRHGLSRRT
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgccaacgatatgagccgccacgcccgccaggtcatgaccgtcgccgagggccgt
gctcgtgccggcgctcccggcgccgacccgtcgatcgcccgttcctggatgcgctgcctg
gagcagtaccacctggacccggcgcagaccatggcgcccaccgtgctggaacatgcccgc
atgctggagcgccgcgagcgcctgcagcaggtgctggagattgccagcggcgagatgaac
agcctgcaccagcaactctccggcgccggccatgccgtgctcctcaccgactcccgtggc
gtcatcctcaactgtgtcagcgaggcggccgaacgacgcaccttcgagcaggccggcctt
tggctgggtgccgactggagcgaggcgcgcgaaggcaccaacggcatcggcacctgcctg
gtcgagcgccaggcgctgactatccaccaggacgaacatttccgcagccgccacaccggc
ctgacctgctcggcgagcccggtcttcgacccccagggcgaactgctggcggtgctcgat
gtgtcctccgcccgtcgcgatgcctcgcggcaaagccagttccacaccatggcgctggtc
aacctgtcggccaaggccatcgagggctgttacttcctgcgccatttcgaggaccaatgg
ctgctgcgcttccacttgcagccggatggcctgggcttgttcagcgaaggcatgctcgcc
ttcgatggcaacggccgcatccaggcggccaaccagagcgccatcaacctgctcggcagc
catcgcgagagcctgctgggacgctcgctggaacagttcttcgactgccggctggacgac
ctcttcaaccgcgccgatccgcagcccaatgccagctggccgctgcgtacccattccggc
cgcacgctgtacgctctgctgcgtgggcagcgtcccgtgcccgcagcgcccgtgctgccg
cgtgcaccgctggccaaagggttgtgcatcgatgatccgcaactggcccacgatttccgc
cgggcgctgaaggtctacgcccacgacgtgccgctgttgctgcagggcgagaccggcacc
ggcaaggaagccttcgcccgcgccgtgcatcagggcggcgagcgcgccggcaagagcttc
gtcgcgctgaactgcgcggcaatccccgaatccctgatcgagagcgaactgttcggttat
cgcggcggcagcttcaccggcgcacgcaaggaaggcatgcgcggcaagctgcaacaggct
gacggcggcaccctgttcctcgacgaaatcggcgacatgccgctggcccttcagacacgc
ctgctgcgcgtgctggaggagcgccaggtggtgcccatcggcggcgagccgcaggacgtg
gatatccgcctgatcagcgccagccaccgcgacctggaggcactggtggctagcgggcag
ttccgcgaagacctctactaccggctcaacggcctggtagtggctttgccgccgctgcgc
gagcgggcagaccgggatgcgttgctcgaccatctgctggccgaggagagcaagggccgt
gcggtgcgcctggaggcagatgtccgccgccacctgctcgactatccgtggccgggcaac
gtgcgtcagttgcgcaatgtgctgcggacgctgtgcgcgctgtgcgagggcgggcgcatc
cagatggccgacctgccgccggacctgcgccgcgcgccggcccccgctgccgtcgctacg
cccgtcgtggcaagcgaggagggtggcgatgcactgggcaatgccgagcgcctggccctg
ctggaagtgctggaggcgcatcactggcacgtcagccgggtggcgcagcaactgggcatc
agccgcaacacgctgtaccgcaagctcaaccgccacggactgagtcgccgaacctga
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