Pseudomonas sp. W03: SD196_04365
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Entry
SD196_04365 CDS
T11012
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pswo Pseudomonas sp. W03
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pswo03016
]
SD196_04365
Enzymes [BR:
pswo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SD196_04365
Transfer RNA biogenesis [BR:
pswo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SD196_04365
Prokaryotic type
tRNA splicing ligases
SD196_04365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XOT23447
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All DBs
Position
complement(923911..925131)
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AA seq
406 aa
AA seq
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MSNKTFQLLEVTNGKPIKLWTQGVPVEDDARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAARTSLMAADLPDNLHGLRSAIEKAVPHGKTFGRR
DQGAWENVPDHADDAWKALAGRFKAITAKYPKLEKTNNRHHLGTLGTGNHFIEVCLDEAD
RVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRDLAYFEEGSRHFDDYVEAVGW
AQDFARQNRELMMRAVIAAARQVIRKPFEASLEAVNCHHNYVQKERHFGEEVLVTRKGAV
SAQKGQLGIIPGSMGARSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKKLFTVEDQVRATA
HVECRKDKDVIDEIPMAYKDIDAVMMAQRELVEVLHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaagaccttccagctgctggaagtcaccaacggcaagccgatcaagctctgg
acccagggcgtgccggtcgaagacgacgcccgccagcaactgatgaacaccgcaaaaatg
ccgttcatcttcaagcacctggctgtgatgccggacgtgcacctgggcaagggttcgacc
atcggcagcgtgatccccacccggggcgccatcatcccggcagcagttggcgtggatatc
ggctgcgggatgatcgccgcgcgcacctcgctgatggcggccgacctgccggacaacctg
cacggcctgcgcagcgccatcgagaaggccgtgccccacggcaagaccttcggccgccgc
gaccagggcgcctgggaaaacgtgccggatcacgccgatgacgcgtggaaggcgctggcc
ggtcgcttcaaggcgatcaccgccaagtacccgaagctggagaagaccaacaaccgccac
cacctgggaaccctcgggaccggcaaccacttcatcgaggtctgcctcgacgaggccgac
cgcgtgtggttcatgctgcacagcggatcgcgcggggtgggcaacgccatcggcaacctg
ttcatcgaactggcccaggccgacatgcgccagcacatcgccaacctgccggaccgcgac
ctggcgtacttcgaggaaggcagccggcacttcgacgactacgtggaagccgtgggctgg
gcccaggacttcgcccggcagaaccgcgagctgatgatgcgcgcggtgatcgccgccgcg
cggcaagtgatccgcaagccgttcgaggccagcctggaagcggtgaactgccaccacaac
tatgtgcagaaggaacgccacttcggcgaagaggtgctggtgacccgcaagggcgcggtg
tccgcgcagaaaggccagctcggcatcattccgggatcgatgggtgccaggagcttcatc
gtccgcggcctgggtaacgaggaagccttctgctcctgcagccacggcgccggccggacc
atgagccgcaccaaggcgaagaagctgttcaccgtggaagaccaggtgcgcgccaccgcc
cacgtcgaatgccggaaggacaaggacgtgatcgacgagatccccatggcctacaaggac
atcgacgccgtgatgatggcccagcgcgagctggtggaagtgctgcataccctgcgtcag
gtggtgtgcgtgaagggatag
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