Pseudomonas sp. W03: SD196_05760
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Entry
SD196_05760 CDS
T11012
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pswo Pseudomonas sp. W03
Pathway
pswo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SD196_05760 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswo03400
]
SD196_05760 (recD)
Enzymes [BR:
pswo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SD196_05760 (recD)
DNA repair and recombination proteins [BR:
pswo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SD196_05760 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
Helicase_RecD
SH3_13
UvrD-helicase
AAA_28
NTPase_1
T2SSE
SLFN-g3_helicase
HerA_C
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XOT23711
LinkDB
All DBs
Position
1232610..1234661
Genome browser
AA seq
683 aa
AA seq
DB search
MTAPLKTAGEMLELIGRWAERGWLRELDRAFATFLVERVADAHPLLILAAALASHQLGRG
HVCLDLAATLADSRFALSLPPEGDSAKDAPELPGVLLDSMSLEAWQAALNDPRLIGEGAG
DTPLVRVGRRLYLRRYWQYECAVRAGIDQRLRQGEALRAGLPAAPLRQALDALFPKKAGN
AQKSQGADWQKLACALVAGNAFGIVTGGPGTGKTTTVVKLLALLQSLALGEGGRPLRIRL
AAPTGKAAARLNESIAGAVQRLQLDGLPNGEAAREAIPTEVTTLHRLLGSRPDSRQFRHH
AGNPLALELLVVDEASMVDLEMMASLLAALPPRARLILLGDKDQLASVEAGAVLGELCSR
AREGHYRPATRDWLEAVTGEPIDAALLDEQGSELDQAVAMLRHSHRFSAGSGIGQLAEAV
NAGDIPALREVWKARHEDLTRIAVDAQDTRSLRDLVVDGGRGGDLFGPVGYRHYLSVLAA
RRPAENADQAALDEWARQVLEAHGQFQLLCALRRGPWGVEGLNTLITGMLHSEGLIPSTQ
VWFLGRPVLVTRNDYGLGLMNGDIGITLALPQPADDGSVRWAPRVAFPAGDGSDAIRWIL
PSRLQAVETVFAMTVHKSQGSEFTHAGLLLPDSLNPILTRELVYTGITRARRWFTLASAG
RGWQVLEQATERRVQRASGLLDR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgccgttgaaaaccgccggtgaaatgctcgaactgatcggtcgctgggccgag
cgcggctggctgcgcgaactcgaccgcgccttcgccaccttcctggtggaacgggtggcg
gatgcgcatccgctgttgatcctggccgctgcgctggccagccaccagctcggtcgcggg
catgtctgcctggaccttgcggcgacactggccgacagccgtttcgcgctgtcgctgcca
ccggagggggattctgcgaaggacgcgcccgagctgcccggcgtactgctcgacagtatg
tcgttggaggcgtggcaggcggcgctgaacgacccgcgcctgattggcgagggcgccggc
gatacgccgttggtgcgggtcggcaggcgcctgtacttgcggcgctattggcaatatgaa
tgcgcggtgcgcgccgggatcgaccagcgcctgcgccagggcgaagccttgcgtgccggc
ttgcccgccgcgccgttgcgccaggcgctggatgcgttgttcccgaagaaggccggcaat
gctcagaagagtcagggggcggactggcagaaattggcctgtgcgctggtggcggggaat
gccttcggcatcgtcaccggcggccccggcaccggcaagaccaccaccgtggtcaagttg
ctggcgctgttgcaaagcctggcgctgggggagggcgggcggccattgcgcatccgtctc
gcggcacccactggcaaggcggctgcgcgcctgaatgaatccatcgccggcgccgtgcag
cgcctgcagctcgacggcctgcccaatggcgaggccgcgcgcgaggcgattcccaccgaa
gtcaccacgctgcaccgcctgctcggcagccgcccggacagtcgtcagttccgccatcac
gccggcaacccgttggcgttggagctgctggtggtggacgaagcctcgatggtcgatctg
gagatgatggcctcgctgctcgccgccctgccaccgcgcgcacggctgatcctgctcggc
gacaaggaccagttggcctcggtggaagccggcgcggtactcggcgaactgtgcagccgc
gcccgcgaaggtcactaccgcccggccactcgcgactggctggaagcagtgacgggagag
cccatcgatgcggcgttgctggacgagcagggcagcgaactcgaccaggccgtggccatg
ctccgccacagccaccgcttcagcgcgggcagcggcatcggccagttggcggaggccgtg
aacgccggcgatatcccggccctgcgcgaggtatggaaggcgcgccacgaagacctgacc
cgcatcgccgtcgacgcccaggacacccgcagcctgcgcgacctggtggtggacggcgga
cgtggcggcgatctgttcggaccggtcggctaccgccattacctgagcgtgctggcggcc
aggcggccagccgagaatgctgaccaggcggcgctggacgaatgggcccggcaggtgctg
gaggcccatgggcagttccagctgctctgcgccttgcggcgtggtccctggggcgtcgaa
gggctcaacaccctgatcactggaatgctgcacagcgaagggctgatcccctcgacgcag
gtctggttcctcggccgcccggtgctggtgacgcgcaacgactacggcctggggctgatg
aacggcgacatcggcatcaccctggcgctgccccagccggcggacgacggcagcgtgcgc
tgggcgccgcgcgtggccttcccggcgggcgacggcagtgatgcgattcgctggatcctg
cccagccgcctgcaggcggtggagaccgtattcgccatgacggtgcacaagtcgcagggc
tcggaattcacccacgccgggttgctgctgcccgacagcctcaaccccatcctcacccgc
gagctggtctacaccggcatcacccgtgcccgccgctggttcaccctggccagcgccgga
cgcggctggcaggtgctggagcaggcgacggaacggcgggtgcagcgggcgagcgggctg
ctggatcgctga
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