Pseudomonas sp. W03: SD196_06310
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Entry
SD196_06310 CDS
T11012
Name
(GenBank) retention module-containing protein
Organism
pswo Pseudomonas sp. W03
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_4
Cadherin_5
CshA_repeat
HU-CCDC81_bac_2
HemolysinCabind
VWA
VWA_2
vWA-TerF-like
He_PIG
Ig_SibA
Motif
Other DBs
NCBI-ProteinID:
XOT23818
LinkDB
All DBs
Position
complement(1330300..1339380)
Genome browser
AA seq
3026 aa
AA seq
DB search
MSSVVAVVKSIIGQVVAVSPEGAQRVLVEGDRIYQGEQLVTGAAGAVTLDTGNGRVVDLG
RDSQWSGADLPHVAPAPAHAQAQLSVPSTEDLQKAIAAGLDPTQALAPTAAGPSASTGGS
GAAGGGHSFVMLGETGGRVDPNIGFGTANNGQAGGRQQQEQGAQNQRGPNHDPRGQDATL
RTDEDTPVSGRLRANDPDGNPLRFDLGEAPRNGAVVVNADGTYTYTPGQNFNGNDSFTVV
VSDGQGGRDTITVNVGVNPVNDAPEAANDGPAAVTEDTPATGNVLTNDHDVDGDALTVTG
FSFGGNNYAAGQTASVSGVGSLVINTDGSFTFTPAQNYNGPVPSATYTVSDGRLSDTAQL
NFGDVSPVNDAPVTAGQSQTTAEDTPISGQIVATDVDQDTLNYTLKPGTEPAHGTLVLNP
ATGEYTYTPSKDYNGTDSFTVVVSDGKGGSVESVVNIEVTPVNDAPVAEDQSKTTAEDTA
ISDKIVATDVDQDTLSFTLKSGAEPKHGTLELDPVTGEYTYTPAKDYNGTDTFTVVVSDG
KGGSVESVVNIEVTPVNDAPVAEDQSKTTAEDTAVSDKIVATDVDQDTLSFTLKSGAEPK
HGTLELNPATGEYTYTPAKDYNGTDTFTVVVSDGKGGSVESVVNIEVTPVNDAPVAEDQS
KTTAEDTAVSDKIVATDVDQDTLSFTLKSGAEPKHGTLELNPATGEYTYTPAKDYNGTDT
FTVVVSDGKGGSVESVVNIEVTPVNDAPIAEDQSKTTAEDTAVSDKIVATDVDQDTLSFT
LKSGAEPKHGTLELNPATGEYTYTPVKNYNGTDSFTVVVSDGQGGSVESVVNIEVTPVND
APVAEDQSKTTAEDTPISGQIVATDVDQDTLNYTLKPGTEPAHGTLVLNPATGEYTYTPS
KDYNGTDSFTVVVSDGQGGSVESVVNIEVTPVNDAPVARNDGSGAVTEDTQATGNVLSND
TDVDGDKLTVTGFSIGGNNYAAGDTATINGVGSLVINGNGSFTFTPAQDYNGPVPSATYT
VTDGQLSSSAELSFADVSPVDDPSLLTADTNTVAEDNPATGNVLDNDHDVDNVLSVASFS
IAGVSGNFTAGQSATISGVGSFTLGSDGNYSFTPAADWNGSVPQITYTTNTGSSSTLDIT
VTPVQDKPVANDDHFTIAEDTPLSFNIGDLSALTGNDTDADGDHLSVYMISSPVNGTLDI
VGGQLVFTPTANYSGPASFTYGIHDGNGNVATGTVHITVTAVDDPSVLVADTGSAQEDHP
ATGNVLTNDSDVDNLLSVASFSIAGLPGSYAAGSVVNIAGKGEFTLGTDGQYSFTPLPDW
NGAVPQVTYTTNTGFSSTLDVSITPVNDAPVAHDDHFTVAEDTPLTFNFGDFGALTGNDT
DVDGDHLSVYMVSNPVNGTFDVVGGQLIFTPAPNFTGQASFTYGVHDGHGGIDTATVYIN
VTPVNDAPTTADQAVSGPEDTSIPGQISASDIDGDTLSYAVVSGKEPANGTLTLDSATGQ
YVYTPNANYHGPDSFTVGISDGNGGYVESIVTIDVTPVNDAPIALNDGPTPITEDTQATG
NVLTNDSDVDGDKLTVTGFTIGGNNYAAGDTATINGVGSLVINSNGSFTFTPVPNYNGPV
PTATYTVSDGKLTATADLSFANITPVDDPSVLTPDSKTVAEDTPASGNVLTNDHDVDNVL
SVASFSIAGVNGSFNAGQSAAISGVGSFTLGSDGNYSFTPAKDWNGSVPEITYTTNTGSS
STLNLTVTPVNDAPVATPDSATVNEDSSVTIDVLNNDSDVDGDPLAVTAASANNGTLVIN
DDGTVTYTPKANFSGTDTITYSISDGKGGTSTSTVNVTVIAVADKPNLSLDSSSGHPPAT
GLTLESWAGLALGSNGSGAAPSTLQSVIDGAGTPNSSGSINSVSNSSVSAGTANKVSGLI
FLEAGHTYTFSGTGDDSIRLVVGGTNVAEATWGGTSGQFSGTFTPTESGYYTLALYQHNQ
SGPGSYNLKMSDNGSAAQTLGTGNALVYHNTGELTGAGERLGDLVGSNGQGHYTVFGPNE
GNEDSSIPLSKINAALVDTDGSESLSISISGIPNGAILSDGIHSFTADASNGSVDVTGWN
LSTLTFTPPANANGTITLQVNATSTEASNHDQATTTLPLDIQVHAVNDAPSGADNSITLN
EDSSRTFSAADFGFTDVDQGDSLSAVRIDGLPTAGSLTLNGVAVVAGQVIAASQLGGLVF
TPAANASGNHYADFTFSVKDSAGAFDPTPNTITLNVNSVNDAPLSADATASIYTGKTYTF
GLNDFAFNDSADGQSQGLQAVIIKSLPDTGTLWLDGSKVVAGQAIDPSAIASGKLTFVPD
AAGSNAHFDFAVQDSGGTANGGVDTSATHGFDIHVGQVQIPGTDPNGDNTLTGGPGDDVI
LGDVGGILTVTQPGTNYNIALIVDTSGSMGDNLAGWSTWNYNDTRMKLVKDALLKLADQL
KGHDGVINIALIGFNSTASIKVSVNDLTDANIKLLTDAIGNSQYEGLQAGGGTDYQEAFG
QAVNWFNGQQNGNENVTLFLTDGDPTESTGSGSLMQNTTQAFANLSALSEVRAIGIGTNV
NEATLKYFDNTNVTGAGSVTYYKGTTLFDFEGGSASLPSGWSKATDGNGSVSVSGGTLQM
MDTHVKSGASSAISSNLSVAAGKTSTFSFDFTKNLTKGDQFTWTLEKQRADGGWDQVEQH
TIAFNTGGSNFTTNAVGEGTYRLDFELNDYTSKGNNDNATVTIDNITRNDLVTAPVGQVD
IVTQADQLNAALHGGSSSSDLAPSGNDTVHAGSGNDIVFGDSINTDNLPWGVNGNPVKPA
ELPAGSGVSALTAFLELKNGHAATSEEMYSFIKENHALFNVDGDTRGGSDNLYGGDGNDI
LYGQGGNDFLFGEGGNDILLGGTGSDQLTGGQGNDILTGGAGADTFIWKAGDIGNDTITD
FNAGEGDRIDISDLLPDAAQNDILSYLKVDTSTSTLQVSTTGQVNSGADVTIKLSGVDLT
SYGSTSTEIVNKLVAGSDPVVKTEHH
NT seq
9081 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgtcgtcgccgtcgtcaaaagcatcatcgggcaagtagtcgcggtatctccc
gaaggcgcccagcgcgtcttggtcgagggtgaccgcatctaccagggtgagcagctggtc
acgggcgccgccggcgccgtgaccctggataccggcaacggccgcgtggtcgacctgggc
cgcgacagccagtggagcggcgccgacctgccgcacgtggcgcccgcgcccgcgcacgcg
caagcacaactctctgttccgagcaccgaggacctgcagaaagccatcgccgccggccta
gacccgacccaggccctggcgcccaccgcggcaggtccgtcggcgtccaccggtggctcc
ggcgctgcgggcggcggccacagcttcgtgatgctcggcgagacgggtggccgggtcgac
ccgaacatcggcttcggcactgcaaacaatggccaggccggcggccggcaacagcaggag
cagggcgcgcagaaccagcgcggaccgaaccacgacccgcgaggccaggacgccaccctt
cgcaccgatgaagacaccccggtcagcggccggctgcgcgccaacgacccggacggcaat
ccgctgcgcttcgatctgggcgaggccccgcgcaatggcgccgtggtggtcaacgccgac
ggtacctacacctacactcccgggcagaacttcaacggcaacgacagcttcaccgtggtg
gtcagtgacggccagggcggccgcgacaccatcaccgtcaatgtcggcgtgaacccggtg
aacgatgccccggaggccgccaacgacggcccggctgccgtgaccgaagacaccccggcc
accggcaacgtgctgaccaatgaccacgacgtcgacggcgatgcgctgaccgtcaccggt
ttcagcttcggcggcaacaactacgccgcaggccagaccgccagcgtcagtggcgtgggt
tcgctggtaatcaacaccgacggcagcttcaccttcaccccggcgcagaactacaacggc
ccggtgccgagcgcgacctacaccgtcagcgacggccggctgagcgataccgcgcagctg
aacttcggcgatgtcagcccggtgaacgacgcgccggttactgccggtcagtcgcagacc
accgccgaggacaccccgatcagtggccagatcgtcgccactgatgtcgatcaggacacg
ctcaactacaccctgaaaccgggcactgagccggctcacggcaccctggtgctgaaccca
gcgaccggcgagtacacctacaccccgagcaaggactacaacggcaccgacagctttacc
gtggtggtaagcgacggcaaaggcggttcggtggagtcggtggtcaacatcgaagtcacc
ccggtgaacgatgcgccggtcgccgaagaccagtccaagaccaccgccgaggacaccgcg
atcagcgacaagatcgtcgccaccgacgtcgaccaggacacgctcagcttcaccctgaag
tccggcgccgagccgaagcacggtaccctggagctggacccggtcaccggcgaatacacc
tacaccccggccaaggactacaacggcactgacacctttaccgtggtggtgagcgatggc
aaaggcggttcggtggagtcggtcgtcaacatcgaagtcactccggtgaacgacgccccg
gttgccgaagaccagtccaagaccaccgccgaggacaccgcggtcagcgacaagatcgtt
gccaccgacgtcgaccaggacacgctcagcttcaccctgaagtccggcgccgagccgaaa
cacggcaccctggagctgaacccggccaccggcgaatacacctacaccccggccaaggac
tacaacggcactgacacctttaccgtggtggtgagcgatggcaaaggcggttcggtggag
tcggtcgtcaacatcgaagtcactccggtgaacgacgccccggttgccgaagaccagtcc
aagaccaccgccgaggacaccgcggtcagcgacaagatcgtcgccaccgacgtcgaccag
gacacgctcagcttcaccctgaagtccggcgccgagccgaagcacggtaccctggagctg
aacccggccaccggtgaatacacctacaccccggccaaggactacaacggcactgacacc
tttaccgtggtggtgagcgatggcaaaggcggttcggtggagtcggtcgtcaacatcgaa
gtcactccggtgaacgacgcgccaatcgccgaagaccaatccaagaccaccgccgaggac
accgcggtcagcgacaagatcgtcgccaccgacgtcgaccaggacacgctcagcttcacc
ctgaagtccggcgccgagccgaaacacggcaccctggagctgaacccggccaccggcgaa
tacacctacaccccggtcaagaactacaacggcaccgacagcttcaccgtggtggtaagc
gacggccaaggcggttcggtcgaatcggtggtcaacatcgaagtcaccccggttaacgac
gcgccggttgccgaagaccagtccaagaccaccgccgaggacaccccgatcagtggccag
atcgtcgccactgatgtcgatcaggacacgctcaactacaccctgaaaccgggcactgag
ccggctcacggcaccctggtgctgaacccggcgaccggcgagtacacctacaccccgagc
aaggactacaacggcaccgacagcttcaccgtagtcgtcagcgacggccagggcggttcg
gtcgaatcggtggtcaacatcgaagtcactccggtgaacgacgctccggtcgcccggaac
gatggttcgggcgccgtcaccgaagacactcaggccaccggcaacgtgttgagcaacgac
actgatgtcgatggcgacaagctgaccgtcaccggcttcagcatcggaggtaacaactac
gccgccggcgataccgcgacgatcaacggcgtaggctcgctggtgatcaacggcaacgga
agcttcaccttcactccagcccaggactacaacggcccggtgcccagtgcgacctacacc
gtcaccgacggccagttgagctccagcgccgaactcagcttcgccgatgtcagcccggtg
gacgacccgtcgctactgaccgcggacaccaacaccgttgccgaagacaatcctgccacc
ggcaacgtactggacaacgaccacgacgtggataacgtcctcagcgttgccagcttcagc
atcgctggcgtgagtggcaacttcaccgccggacagagcgcgaccatcagcggtgtcggc
agcttcaccctgggcagcgatggcaactacagcttcactccggcggcagactggaacggc
tcggtccctcagatcacctacaccaccaataccggcagcagctctacgctggacatcacc
gtcactccggtgcaggacaagccggttgccaacgacgatcacttcaccatcgccgaagac
accccgctgagtttcaacatcggtgacttgagcgcgctcaccggcaacgataccgatgcc
gacggcgaccatctctccgtgtacatgatcagcagcccggtgaacggcacgctcgacatc
gtcggcggccagttggtcttcaccccaacggccaactacagcggcccggcctccttcacc
tatgggattcacgacggcaacggcaacgtcgccaccggtaccgtgcatatcaccgtcact
gcggtggatgacccctccgtgctggtcgccgacactggcagcgcacaagaagaccacccc
gccacgggcaacgtgctgaccaacgattcggacgtcgacaacctgctgagtgtcgccagt
ttcagcatcgccggcctgcccggcagctatgccgccggctccgtggtcaatatcgccggc
aagggcgagttcaccctgggcaccgacggccagtacagcttcaccccgctgcccgactgg
aatggtgcggtgccccaggtcacctacaccaccaataccggtttcagcagcaccctggac
gtcagcatcaccccggttaacgatgcgccagtggcgcacgatgaccacttcaccgtcgcc
gaagacacgccgctgaccttcaactttggcgacttcggcgctctgaccggcaacgacacc
gatgtagacggcgatcacctctccgtctacatggtcagcaacccggtgaatggcacgttc
gacgtcgtcggcggccagctgatctttaccccggcgccgaacttcaccggccaggcctcc
ttcacctatggcgtccatgacggtcacggcggcatcgacactgccaccgtctacatcaac
gtcaccccggtgaacgatgctcccaccaccgccgaccaggccgtcagcgggccggaagac
acctcgatccccggccagatctcggccagcgacatcgacggcgataccctcagctacgcc
gtggtcagcggcaaggagccggccaacggcaccttgaccctggacagcgcgaccggccag
tacgtctatacgccgaacgccaactaccacggccccgacagcttcaccgtgggcatcagc
gatggcaacggcggttatgtcgaatccatcgtgacgatcgatgtcactccggtgaacgac
gcgccgatcgccctgaatgacggcccgactccgatcactgaagacacccaggccaccggc
aacgtgctgaccaacgacagtgatgtcgacggcgacaagctgaccgtcaccggcttcacc
attggcggcaacaactacgccgccggcgataccgcgacgatcaatggcgtcggctcgctg
gtgatcaacagcaacggcagcttcaccttcaccccggtgccgaactacaacggcccggtg
ccgaccgcgacctacaccgtcagcgacggcaaactgaccgccaccgccgacctgagcttc
gccaacatcaccccggtggacgatccgtcggttctgaccccggatagcaaaaccgtcgcc
gaagacacccctgccagcggcaacgtgctgaccaacgaccacgacgtggacaacgtcctc
agcgtcgccagcttcagcatcgcgggcgtgaacggcagcttcaacgccggccagagcgcg
gccatcagcggcgtcggcagcttcaccctgggcagcgacggcaactacagcttcaccccg
gcgaaggattggaacggctcggtccccgagatcacctacaccaccaacaccggcagcagc
tcgacactgaacctcaccgtcaccccggtgaacgacgccccggttgccacccccgacagc
gccaccgtcaacgaggacagctccgtcaccatcgacgtgctgaacaacgacagcgatgtg
gacggcgacccgctggccgtcaccgcagccagcgccaacaacggcaccctggtgatcaac
gacgacggcaccgtcacctacacgccgaaggccaacttcagcggcaccgataccatcact
tacagcatcagcgatggcaaaggtggtacctccacctcgacggtgaacgtgaccgtcatc
gccgtggcggacaagccgaacctcagcctggacagcagcagcggccatcctccggccacc
ggcctgaccctggaaagctgggctgggctcgccctgggcagcaacggcagcggcgccgcg
ccttccaccctgcaatcggtcatcgatggtgccggcacgcccaacagcagcggctcgatc
aacagcgtgagcaactccagcgtcagcgctggcaccgccaacaaggtcagcggcctgatc
ttccttgaggccggccacacctataccttcagcggtacaggcgatgacagcatccgcctg
gtcgtcggcggcaccaacgtcgccgaagccacctggggcggcaccagcggccagttcagc
ggcaccttcacgcccaccgagagcggctactacaccctcgcgctctaccagcacaaccag
agcggcccgggcagctacaacctcaagatgtccgacaacggcagcgcggcgcagaccctc
ggcaccggcaacgcactggtctaccacaacaccggcgagctgaccggtgcgggcgagcgc
ctgggcgacctggtcggcagcaatggccagggccactacaccgtcttcgggcccaacgag
ggcaacgaagacagcagcatcccgctgtcgaagatcaacgcggcgctggtcgataccgac
ggttcggaaagcctgtcgatcagcatcagtggcatccccaatggggccatcctgagcgac
ggcatccacagcttcaccgccgacgccagcaacggcagtgtggacgtcaccggctggaac
ctctccaccctgaccttcaccccgccggccaatgccaacggcactattaccctgcaggtg
aacgccacctccaccgaggcgagcaaccacgaccaggcgaccaccaccctgccgctggac
atccaggtacacgcggtcaacgacgcccccagtggcgccgacaacagcatcaccctcaac
gaggacagcagccgcaccttcagcgccgccgacttcggcttcactgacgtggaccagggc
gacagcctgagcgccgtacgtatcgacggcctgccgaccgccggcagcctgaccctcaac
ggtgtagccgtggtcgccggccaggtgatcgccgccagccagctgggcggcctggtgttc
accccggcggccaacgccagcggcaaccattacgccgacttcaccttctcggtgaaggac
agcgctggtgccttcgatccgacgccgaacaccatcaccctgaacgtcaactcggtgaac
gacgcgccgctgtcggcagatgccacggccagcatctacaccggcaagacctataccttc
gggctgaacgacttcgccttcaacgacagcgcggacggccagtcccagggcctgcaggcg
gtcatcatcaagtccctgcccgataccggcaccctgtggctcgacggcagcaaggtcgtg
gccggccaggccatcgaccccagcgccatcgccagcggcaagttgaccttcgtgccggac
gccgcgggcagcaacgcgcacttcgacttcgccgtgcaggacagcggcggcaccgccaat
ggtggcgtggatacctcggcgacccacggcttcgacatccatgtcggccaggtacagatc
cccggcaccgatcccaacggcgacaacaccctgaccggcggcccgggcgatgacgtgatc
ctgggcgatgtgggcggcatcctgaccgtcacccagccgggcaccaactacaacatcgcc
ctgatcgtcgatacttccggcagcatgggcgacaacctggccgggtggagtacctggaac
tacaacgacacgcggatgaagctggtcaaggacgcgctgctcaaactggccgaccagctg
aagggccacgatggcgtgatcaacatcgcgctgatcggcttcaacagcaccgccagcatc
aaggtcagcgtgaatgacctgaccgatgccaacatcaagctgttgaccgatgccatcggc
aactcgcagtacgagggcctgcaggctggcggcggtaccgactaccaggaggcgttcggc
caggcggtgaactggttcaacgggcagcagaacggtaatgagaacgtcacgctgttcctc
accgacggcgacccgaccgagtccaccggcagcggcagtctgatgcagaacaccacgcag
gccttcgccaacctgtcggcgctcagcgaggtccgtgcgatcggcatcggcaccaacgtt
aacgaagcaacgctcaagtacttcgacaacaccaatgtcaccggcgcgggctccgtgacc
tattacaagggcaccaccctgttcgacttcgagggcggcagcgccagcctgcccagcgga
tggagcaaggccaccgacggcaatggctcggtcagcgttagcggcggcacgctgcagatg
atggacacccacgtcaagagcggcgccagcagcgccatcagctcgaacctgtcggtcgcg
gcgggcaagacctcgaccttcagcttcgacttcaccaagaacctgaccaagggcgaccaa
ttcacctggaccctggagaagcagcgggccgacggcggctgggatcaggtcgagcagcac
accatcgccttcaataccggcggcagcaacttcaccaccaacgccgtgggcgaaggcacc
tatcgcctggacttcgagctcaacgactacacgagcaaaggcaacaacgacaacgccacc
gtcaccatcgacaacatcacccggaacgacctggtcactgccccggtcggccaggtcgat
atcgtcacccaggccgaccagctcaatgcggccctgcacggcggctccagcagctcggac
ctcgcgccgtcgggcaacgacaccgtccacgcaggctcgggcaacgacatcgtcttcggt
gacagcatcaacaccgacaacctgccctggggcgtcaacggcaacccggtcaagccggcc
gagctgccggcgggctccggtgtcagcgcactgacggcgttcctggagctgaagaacggc
catgccgcgacctccgaagagatgtacagcttcatcaaggagaaccatgcgctgttcaac
gtcgacggcgacacccgtggcggcagcgacaatctctacggtggcgacggcaacgacatc
ctctacggccagggcggcaacgacttcctgttcggcgagggcggcaatgacatcctgctg
ggtggcaccggcagcgaccagctcaccggcggccagggcaatgacatcctcaccggcggt
gcgggtgccgacaccttcatctggaaggccggcgacatcggcaacgacaccatcaccgac
ttcaatgccggtgaaggcgaccgcatcgacatcagcgacctgctgccggatgccgcgcag
aacgacatcctcagctacctgaaggtagacaccagtacctcgaccctgcaggtgagcacc
accggccaggtcaacagcggtgcagacgtcaccatcaagctgagcggcgttgacctgacc
agctacggttcgacctccaccgagatcgtcaacaaactggtggcgggctccgatcccgtg
gtcaagactgagcatcactga
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integrated database retrieval system
