Pseudomonas sp. W03: SD196_06320
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Entry
SD196_06320 CDS
T11012
Name
(GenBank) type I secretion system permease/ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
pswo Pseudomonas sp. W03
Pathway
pswo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SD196_06320
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswo02000
]
SD196_06320
02044 Secretion system [BR:
pswo02044
]
SD196_06320
Transporters [BR:
pswo02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
SD196_06320
Secretion system [BR:
pswo02044
]
Type I secretion system
Adhesin protein transporter
SD196_06320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
SMC_N
AAA_21
DUF87
AAA_29
Peptidase_C39
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
XOT23820
LinkDB
All DBs
Position
1341125..1343281
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AA seq
718 aa
AA seq
DB search
MDQEVSRVSSRHDPRGLLDDPLLDSLLTLCQLHQKPASRAMLTSGLPLPEQRLTAELLPR
AAARAGLQGRLLQRRLEQIPALALPAMLLLREGRCAVLLGWEGEGQARLLLSESDGGEVR
VSRELLLEDYSGQAFFAQPQHKFDLQHGELIPRAKSWFRDTLKRSRWLYVDAVAASLLIN
LIALAAPLFVMNVYDRVVPNQAAATLWVLAIGISGAYLFDLLLKTMRGLCLDLAGKKTDL
IISATLFERIVGMSMKYRPARVGSFAQNIHEFQTLRDFLNSLTLTTLIDLPFTLLILLVI
GIIGGPLVFVPLVAFPLAAGLGWMLQKPLVETMNRTMALSAERQSSLIETLASLDAVKVN
NAESERQYLWEQTIGTLSRLELRVKLLSSLAMNSTVLIQALAGVVMIIGGVYLIIAGDLS
MGGLIACYMLNGRALGPLTQLSGLIQRYQQARLSMETTNQMMELPQERSADERPLTRSQL
RGGIEMRELDFVYPNQQVAALHGINLQFRPGEKVGIVGRSGSGKSSLAKLIVGLYQPDKG
NLLVDGADVRQLDISELRHNIGYVPQDISLFSGTLRDNLVCGARYVDDERVLEVAELTGV
NEFVRLHPQGYELQVGERGLNLSGGQRQNVALARALLLDPPILLLDEPTSAMDNAGEERL
KQRLHSIIGDKTLLLVTHRASMLSLVDRLVIIDKGRIIADGPKDVVMDALKKGQISVA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtggatcaagaagtcagtcgagtttcctcacgtcacgatccgcgcggtctgctcgatgac
ccgctgctggacagcctgctgacgctctgccagctgcaccagaagccggccagtcgcgcc
atgctcaccagcggcctgccgctgcccgagcaacgcctgaccgccgagttgctgccgcgc
gcagcggcccgcgcgggcttgcagggacgcctgttgcaacggcgcctggagcagattccg
gcgcttgcgctaccggccatgctgctgctgcgcgagggacgttgcgcggtgctgctgggt
tgggaaggtgagggccaggcgcgcctgctgctcagcgagagcgacggcggcgaagtgcgc
gtgtcccgcgagctgctgctggaggattacagcggccaggcattcttcgcccagccgcag
cacaagttcgacctgcagcacggggagctcattccccgcgccaagagctggttccgcgac
accctgaagcgctcgcgctggctgtatgtcgacgccgtggccgcgagcctgctgatcaac
ctgatcgccctggccgcaccgctgttcgtgatgaacgtctacgaccgcgtggtgcccaac
caggccgccgctaccctctgggtgctggccatcggcatcagcggcgcctacctgttcgac
ctgctgctcaagaccatgcgcggcctgtgcctggacctggcgggcaagaagaccgacctg
atcatctcggcgacgctgttcgagcgtatcgtcggcatgagcatgaaataccggcccgcg
cgggtcggcagctttgcgcagaacatccacgaattccagacgctgcgcgacttcctcaac
tcgctgaccctcaccaccctgatcgacctgccgttcaccctgctgatcctgctggtgatc
ggcatcatcggcgggccgctggtgttcgtcccgctggtggccttcccgctggccgcgggt
cttggctggatgctgcagaagccgctggtggaaaccatgaaccgcaccatggcgctgtcc
gccgagcgccagtcgagcctgatcgagaccctggccagcctcgacgcggtgaaggtgaac
aacgccgagagcgagcgccagtacctctgggaacagaccatcggtaccctgagccgcctg
gaactgcgggtgaaactgctgtcgtccctggcgatgaacagcaccgtgctgatccaggcg
ctggccggggtggtgatgatcatcggcggcgtctacctgatcatcgccggcgacctgtcc
atgggtggcctgatcgcctgctacatgctcaacggccgcgccctcggcccgctgacccag
ctctccgggctgatccagcgctaccagcaggcgcgcctgtccatggagaccaccaaccag
atgatggaactgccgcaggagcgaagcgccgacgagcgtccgctgacccgctcgcaactg
cgcggcggcatcgagatgcgcgagctggatttcgtctacccgaaccagcaggtggcggcg
ctgcacggcatcaacctgcagttccgtcctggcgagaaggtcggcatcgtcggccgcagc
ggctcgggcaagagctccctggccaagctgatcgtcggcctctaccaaccggacaagggc
aacctgctggtggatggcgccgacgtgcgccagctggacatcagcgagctgcgccacaac
atcggctacgtgccgcaggacatcagcctgttcagcggcaccctgcgcgacaacctggtc
tgcggggcgcgctacgtggatgacgagcgcgtgctggaggtggccgagctgaccggcgtg
aacgagttcgtccgcctgcatccgcagggctacgagctgcaggtcggcgaacgcggcctg
aacctgtccggtggccagcggcagaacgtcgccctggcccgtgcgctgctgctcgatccg
ccgatcctgctgctcgacgagcccaccagcgccatggacaacgccggcgaagagcgcctg
aagcagcgcctgcattcgatcatcggcgacaagacgctgctgctggtcacccaccgcgcc
tccatgctcagcctggtggaccgcctggtgatcatcgacaaggggcgcatcatcgccgac
ggcccgaaggacgtggtgatggacgcattgaagaaggggcagatcagtgtcgcttga
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