Pseudomonas sp. W03: SD196_20285
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Entry
SD196_20285 CDS
T11012
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pswo Pseudomonas sp. W03
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswo03009
]
SD196_20285 (rimO)
Enzymes [BR:
pswo01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SD196_20285 (rimO)
Ribosome biogenesis [BR:
pswo03009
]
Prokaryotic type
ribosomal protein modification factors
SD196_20285 (rimO)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
RNase_II_C_S1
YajR_YAM
Motif
Other DBs
NCBI-ProteinID:
XOT21256
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Position
4449506..4450828
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AA seq
440 aa
AA seq
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MSTATPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAE
SLDAIGEAIAENGKVIVTGCMGVAEDSIRDVHPSVLAVTGPQQYEQVVNAVHEVIPPKAE
HNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAQRL
VKAGVKELLVISQDTSAYGVDLKYKMDFWDGQPVKTRMLELCQALSAMGVWVRLHYVYPY
PNVDDVIPLMAEGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKKWREICPELTIR
STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLDVVPDDVKQDRW
ERFMAHQQAISAARLQLKIGKEIDVLIDEVDDEGAVGRSFADAPEIDGAVYVDTFDVKPG
DKVRVRITDADEYDLWAELV
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccacacccaaagtcggattcgtcagcctgggttgccccaaagccacggtc
gattccgaacgcatcctcacccaactgcgcatggaggggtacgaaatcgtccccacctac
caggacgcagacgtggtggtggtgaacacctgcggcttcatcgatagcgccaaggctgaa
tccctcgacgccatcggcgaagccatcgccgagaacggcaaggtgatcgtcaccggttgc
atgggcgtggccgaagacagtatccgcgatgtacaccccagcgtgctggccgtcaccggc
ccgcagcagtatgagcaggtggtcaatgccgtccacgaggtgatcccgcccaaggccgag
cacaacccgctgatcgacctggtgccgccgcagggcatcaagctgaccccgcgtcactac
gcctacctgaagatttccgaaggctgcaaccacagctgcagcttctgcatcatcccgtcc
atgcgcggcaagctggtcagccgtccggtgggcgacgtgctcagcgaagcccagcgcctg
gtcaaggccggcgtcaaagagctgctggtcatctcccaggacaccagcgcttacggcgtg
gacctgaagtacaagatggacttctgggacggccagccggtgaagacccgcatgctggag
ctgtgccaggcgctctccgccatgggcgtgtgggtgcgcctgcactatgtctacccgtac
cccaacgtcgacgatgtgatcccgctgatggccgagggcaagctactgccctacctggac
atccccttccagcacgccagcccgaaagtgctcaagtccatgaagcgccccgccttcgag
gacaagaccctggcgcgcatcaagaagtggcgcgagatctgccccgagctgaccatccgc
tccaccttcatcgtcggcttccccggcgagaccgaggaagacttccagtacctgctggac
tggctgaccgaagcccagctcgaccgcgtcggctgcttccagtactccccggtagaaggc
gccccggccaacgacctgggcctggacgtggtgcccgacgacgtcaagcaggaccgttgg
gagcgcttcatggcgcaccagcaggccatctccgccgcccgcctgcagctgaagatcggc
aaggaaatcgacgtgctgatcgacgaagtggacgatgaaggcgccgtaggccgctccttc
gccgacgccccggaaatcgacggtgccgtatacgtcgacaccttcgacgtgaagccgggc
gacaaggtgcgcgtgcgcatcaccgacgccgacgagtacgacctctgggccgaactggtc
tga
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