Pseudomonas sp. W03: SD196_24355
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Entry
SD196_24355 CDS
T11012
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pswo Pseudomonas sp. W03
Pathway
pswo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD196_24355 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswo03019
]
SD196_24355 (rnr)
03016 Transfer RNA biogenesis [BR:
pswo03016
]
SD196_24355 (rnr)
Enzymes [BR:
pswo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SD196_24355 (rnr)
Messenger RNA biogenesis [BR:
pswo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SD196_24355 (rnr)
Transfer RNA biogenesis [BR:
pswo03016
]
Prokaryotic type
tRNA degradation factors
SD196_24355 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
MCM5_C
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
XOT22014
LinkDB
All DBs
Position
complement(5307936..5310677)
Genome browser
AA seq
913 aa
AA seq
DB search
MADWQNLDPEAAREAEKYDNPIPSRELILAHLAERGAPATRAQLLDEFGLSGEEPEEALR
RRLRAMERDGQLIYTRRGAYAPVDKLDLILGRISGHRDGFGFLIPDDGSDDLFLSPTQMR
LVFDGDRALARVSGFDRRGRREGAVVEVVERAHETIVGRYFDESGIGTVVADNPKIQQEV
LIPPGKAGKAKHNQFVQVRIDVWPSVHRQAQGEVVEVLGDYMAPGMEIEVALRSYDIPHT
WPEAVEKEAAKLKPEVAEKDKEKRVDLRALPFVTIDGEDARDFDDAVYAEKRKGGGWKLF
VAIADVSHYVKVGSALDEEAAKRGNSVYFPERVIPMLPEILSNGLCSLNPLVDRLAMVCE
MSLSKAGKMTDYQFYEAVIHSHARLTYTKVSQYLETPDSPEGQRLKEQLPAVVPHLNTLY
DLYKVLVGARHVRGAIDFETQETRIVFGADRKISEIRPTQRNDAHKLIEECMLAANVATA
KFLEKHAIPALYRVHDGPPQEKLNNLRQFLGELGLTLYRGKGEPTPADYQKLLESIQGRP
DLQLIQTVMLRSLSQAVYSPENNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRGLIRSKA
ASEHVQRVGAASMPKARIYPYDEPRLAQLGEQCSMTERRADEATRDVTNWLKCEFMRERV
GETFPGVITAVTGFGIFVELTDIYVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLG
DTVEVVVARVDLDERKIDFELSDNVLSAPIGRKKRGEKAEPVAKGKVAKGKAPKGAAARE
KPAKASRQVADDPFFAPDVAVVPSSQPRKRKVGVVQALPSVAPEMLAKAEELLGNTDVRK
SREVKKALLEEAKVGGKKPAAGKGKSAPAAGKPRNPSKQKARSAKPTKHRKGSSAPKGGA
SGGAPASKRKAKK
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaaacctcgatcccgaggccgcccgcgaggcggaaaaatacgacaac
cccattcccagccgcgaactcattctggcgcatctcgccgaacgcggcgcgcccgccacg
cgggcccagttgctcgatgaattcgggctctccggcgaggagccggaagaagcactacgc
cgccgactgcgcgccatggagcgcgacggccagctcatctatacccgccgtggcgcctac
gcgcctgtggacaagcttgacctgatcctcggccgcatctccggccaccgcgacggcttc
ggcttcctgattcccgatgacggcagcgacgacctgttcctcagcccgacgcagatgcgc
ctggtgttcgatggcgaccgcgccctggcgcgcgtgtccggcttcgaccgccgtggccgc
cgtgagggtgccgtggtggaagtggtcgaacgcgcccacgagaccatcgtcggccgctac
ttcgacgagagtggcatcggcacggtggtggccgacaacccgaagatccagcaggaagtg
ctgatcccgccgggcaaggccggcaaggccaagcacaaccagttcgtccaggtgcgtatc
gatgtctggccgagcgtgcaccgccaggcccagggcgaggtggtggaagtgctcggcgac
tacatggcgccgggcatggagatcgaagtcgccctgcgcagctacgacattcctcacacc
tggcccgaagccgtggaaaaggaagcggccaagctcaagcccgaagtggcggagaaggac
aaggagaaacgcgtcgacctgcgtgccctgcctttcgtcaccatcgacggcgaggatgcc
cgtgacttcgacgacgcggtctacgcggagaagcgcaagggtggcggctggaaactgttc
gtcgccatcgccgacgtctctcattatgtgaaggtcggctctgccctggatgaagaggcg
gccaagcgcggcaactcggtgtacttccccgagcgggtgatcccgatgctgccggagatt
ctctccaacggcctgtgctccctgaatccgctggtcgatcgcctggccatggtctgcgag
atgagcctctccaaggccggcaagatgaccgactaccagttctacgaggcggtcatccat
tcccatgcgcgcctgacctacaccaaggtcagccagtacctggaaaccccggacagcccc
gaaggccagcgcctgaaggagcagctcccggcggtggtgccgcacctgaacacgctttat
gacctgtacaaggtgctggtcggcgcgcgccacgtgcgcggggcgatcgatttcgagacc
caggaaacccgcatcgtctttggcgcggaccgcaagatctcggaaatccgcccgacccag
cgtaacgatgcgcacaagctgatcgaggaatgcatgctggcggccaacgtcgccaccgcc
aagttcctggaaaagcacgccatcccggcgctgtaccgcgtccacgacggtccgccgcag
gaaaagctgaacaacctgcgccagttcctcggcgaactgggcctgaccctgtatcgcggc
aagggcgagccgacaccggcggattaccagaagctgctggaatccatccagggtcgcccg
gacctgcaactgatccagacggtgatgctgcgctccctgagccaggccgtgtacagcccg
gagaacaacggtcacttcggcctgaactacgaggcctacacccacttcacctcgccgatt
cgtcgttacccggacctgctgacccaccgcgccatccgtggcctgatccgctccaaggcg
gcttcggagcacgtacagcgcgtcggcgccgccagcatgcccaaggcgcgcatctatccg
tacgatgagccgcgcctggcacaactgggcgagcagtgctcgatgaccgagcgccgtgct
gacgaggcgacccgcgacgtcaccaactggctgaagtgcgagttcatgcgcgagcgcgtg
ggcgagaccttccccggtgtgatcaccgcggtgaccggtttcggcatcttcgtcgagctg
accgacatctatgtcgagggcctggtccacgttaccgcgctgccgggcgactactaccac
ttcgatgccgtgcaccatcgcctgagcggcgagcgcaccggtcgcagcttccgcctcggc
gataccgtggaagtggtggtggcgcgcgtcgacctggacgagcgcaagatcgacttcgaa
ctctccgacaatgtgctgagcgcgcccatcggccgcaagaagcgtggcgagaaggccgag
ccggtcgccaaaggcaaagtggcgaagggcaaggctcccaagggcgctgcagccagagag
aagccggccaaggctagtcgccaggtggcggacgatccgttcttcgcccccgacgtggcc
gtggtgccgtcgagccagccgcgcaagcgcaaggtcggcgtggtccaggcgctgccgtcg
gtggctccggaaatgctcgcgaaggccgaggaactgctcggcaataccgacgtacgcaag
agccgcgaagtgaagaaggcgttgctcgaagaagccaaggttggcggcaagaagccggct
gccggcaagggcaagtccgcgcccgctgcgggcaagccgcgcaatccttcgaaacagaaa
gcccggtccgccaagccgaccaagcaccgcaagggctcgtccgcgcccaagggcggtgcg
tccggtggcgctccggccagcaagcgtaaggcgaagaaatga
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