Pseudomonas sp. W03: SD196_25045
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Entry
SD196_25045 CDS
T11012
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pswo Pseudomonas sp. W03
Pathway
pswo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD196_25045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswo03019
]
SD196_25045
Enzymes [BR:
pswo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SD196_25045
Messenger RNA biogenesis [BR:
pswo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD196_25045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XOT22150
LinkDB
All DBs
Position
5478942..5480960
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AA seq
672 aa
AA seq
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MSFSSLGLSEALAGAVEAAGYARPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLKSACIFGGVGMN
PQVQAVSKGVDVLVACPGRLLDLCGQGSIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRIPAVQKRVLL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRTGEAISLVAPDEDKL
LKAIERLTKQRIPDGDMQGFDPDAVLPEVQLPEPKEATQRQPRKDKAKRGERKDRSKEKP
QQPQAEEQQNAAAPAAGEAAEGDKPAGKRRRRGGRGKKKGEGQGSDAQSNTNAQPRQQGQ
GRQQQQPKPPRAPKVDPDRDPEEFLDDDFDNFGNRADYVSPFPDKDQPRGQRRRGGQGQG
QNQGQGQQRARGQGGQGGGQGNGQNRGQGQGQGRAAKKPNGSGRGQGQGQSGNGQGKPGQ
RKRGGKAPASRMNDAPLREPSEYGAAKPTRQPVVINKRDLVRSDRFPTAEQLEELEPRRK
TERPALLTRNRD
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtccttctcttccctcggtctctccgaggccctggctggcgccgttgaagccgccggc
tacgcgcgccccacccccgttcaggaacgcgccatccccgccgttctgcaaggccgcgac
ctgatggttgccgcccagaccggcaccggcaagaccggcggcttcgccctcccggtgctc
gagcgcctgttccccgaaggtcaccccgaccgcgaacaccgccacggcccgcgccaggcg
cgcgtcctggttctgactccgacccgcgagctggccgcccaggtgcatgacagcttcaag
gtctacgctcgcgacctgcccctgaaaagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccgtctccaagggcgtcgacgtgctcgtcgcctgccccggtcgcctg
ctcgacctgtgcggccagggcagcatcgacctgtcccatgtggaaatcctggttctcgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtcctcgccaag
ctgccgcccaagcgccagaacctgctgttctcggcgaccttctcgaaagacatcgtcgac
ctcgccaacaagctcctgcacaacccggagcgcatcgaggtcaccccgccgaacaccacc
gtcgagcgcatcgaacagcgcgtgttccgcattcccgccgtacagaagcgcgttctgctg
gcgcacctggtgaccgtaggcgcctgggaacaggtgctggtgttcacccgcaccaaacac
ggcgccaaccgcctggccgaatacctgaccaagcacggcctgccggccgccgcgatccac
ggcaacaagagccagaacgcgcgcaccaaagccctggccgacttcaaggccaatgacgtg
cgcattctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagctgccccac
gtggtcaactacgagttgccgaacgtcgaggaagactacgtccaccgtatcggccgtacc
ggccgcgcgggtcgtaccggtgaggccatctccctggtggcgccggacgaagacaagctg
ctcaaggccatcgagcgcctgaccaagcagcgcatccccgacggcgatatgcagggcttc
gaccccgacgccgtgctgccggaagtccagctgcccgaacccaaggaagccacccagcgc
cagccgcgcaaggacaaggccaagcgtggcgagcgcaaggaccgcagcaaggaaaagccc
cagcaaccgcaggccgaggagcagcagaacgccgccgctcccgctgccggcgaagccgct
gaaggcgacaagcccgccggcaagcgccgccgccgtggtggacgtggcaagaagaagggt
gaaggccagggcagcgacgcccagtccaacaccaatgctcagccgcgccagcagggacag
ggccgccaacagcagcagcccaagcccccgcgcgcgccgaaggtcgatccggaccgcgac
ccggaagaattcctcgacgacgatttcgacaacttcggcaaccgcgccgactacgtcagc
cccttcccggacaaggaccagccgcgcggacagcgccgccgtggcggacagggccaaggc
cagaaccagggtcagggccaacagcgcgcccgcggccagggtggtcagggcggcggccag
ggcaacggtcagaaccgtggccagggtcaaggtcagggccgggccgcgaagaagcccaat
ggcagcggtcgcggtcagggccaaggccagagcggcaacggccagggtaagccaggtcag
cgcaagcgcggcggcaaggctccggcctcgcggatgaacgatgccccgctgcgcgagccg
agcgagtacggcgccgccaagcctacccgccagccggtggtgatcaacaagcgcgacctg
gtccgcagcgaccgcttccccactgccgagcagttggaagaactggaaccgcgccgcaag
accgagcgtccggcgctgctgacccgcaaccgcgactga
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