Pseudomonas sp. W03: SD196_25640
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Entry
SD196_25640 CDS
T11012
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pswo Pseudomonas sp. W03
Pathway
pswo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD196_25640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswo03019
]
SD196_25640
03400 DNA repair and recombination proteins [BR:
pswo03400
]
SD196_25640
Enzymes [BR:
pswo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD196_25640
Messenger RNA biogenesis [BR:
pswo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD196_25640
DNA repair and recombination proteins [BR:
pswo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SD196_25640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
XOT22257
LinkDB
All DBs
Position
complement(5618885..5620810)
Genome browser
AA seq
641 aa
AA seq
DB search
MHDTLERVFGFRQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLMPHLTLVVS
PLLALMQDQLAFLTRHGIAAASIDSAQSREQTAQTMARARSGELKVLMISVERLKNERFR
NFISEVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQKQFRIPQVLLLTATATPAVIADM
RAKFAISESDVVTTGFYRANLDLQVEPISSAARRARLVEWLRERPGKPAIVYVTQQKTAE
DIAAYLAERGIPACAYHAGMEHPEREGIQRRFMDGQLNCIVATIAFGMGIDKSDIRQVVH
YDLPKSLENYSQEIGRAGRDGQRSECLVLANRDSLNVLENFVYGDTPEREGIRNVLEDIR
QAPNGQWETMLVPLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRYKLLIDSAVLL
GHFEGERRQFVEAILNTSARARTWATLDFDTLYSRHGAERARVVKALDYFQERGWVELES
KQMTEVYAVRDAQFDVDKLSDELHRYFKRHEESEIARIGAMLDLLASEECLSWRLAHYFG
DEQAPRQCGHCSVCAGRVAHLPEPPALPPLDGQSLHNRCAAFLEKYRSARGMAPSADCLT
RFLCGISVPAFTRMRARTLPGYATLEDYPYARVRNWVQAQL
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctcgaacgcgtcttcggctttcgccagttccgccccggccaggaggcg
gcggtcagcgccgtgctcgccgggcgctcggcggcggcgatctttcccaccggctcgggc
aagtcgctgtgctaccagttgccggcgctgctgatgccgcacctgacgctggtggtgtcg
ccgctgctggcgctgatgcaggaccaactggccttcctcacccgccacggcatcgccgcc
gccagcatcgattcggcgcagagccgcgagcagaccgcgcagaccatggcccgcgcgcgt
agcggcgagctgaaagtgctgatgatttcggtggaacggctgaagaacgagcgcttccgt
aacttcatcagcgaggtgcccatttccctgctggtggtggatgaagcgcactgcatctcg
gaatggggccacaactttcgccccgattacctgaagctgccggactaccagaagcaattc
cgcattccccaggtgctgctgctcaccgccacggccacgccggcggtgatcgccgacatg
cgcgccaagttcgccatcagcgaaagcgatgtggtcaccaccggcttctaccgcgccaac
ctcgacctgcaggtggagcccatctccagcgccgcccgccgggcgcggctggtggagtgg
ctgcgggagcggccaggcaaaccggccatcgtctacgtcacccagcagaagaccgccgag
gacatcgccgcgtacctggccgaacgcggcattcccgcgtgcgcctaccacgccgggatg
gagcaccccgagcgcgaaggcatccagcgccgcttcatggatggccagctgaactgcatc
gtcgccaccatcgccttcggcatgggcatcgacaagagcgatatccgccaggtggtgcac
tatgacctgcccaagtccctggagaactacagccaggaaatcggccgcgccgggcgcgac
ggccagcgctcggaatgcctggtgctggccaaccgcgacagcctcaacgtgctggaaaac
ttcgtctacggcgacacccccgagcgcgagggcatccgcaatgtgctggaggacatccgc
caggcgccgaatggccagtgggagaccatgctggtgccgctgtcggaccagtccaatatc
cgccagttgccgctcaagacgctgctggtgcagttggagctacgcggcatcatcgcgccg
cgtttcgcctatttcgccgaatatcgctacaaactgctcatcgattctgccgtattgctc
ggccacttcgagggtgagcggcggcagttcgtcgaagccatcctcaacacctcggcgcgt
gcgcggacctgggcgaccctggatttcgacaccctctacagccgccatggtgccgagcgc
gcgcgggtggtgaaggcgctggattacttccaggagcgcggttgggtcgagctggaaagc
aagcagatgaccgaggtctacgcagtacgcgatgcccagttcgatgtggataagttgagt
gacgagctgcaccgctacttcaagcggcatgaggagagcgagatcgcccgcatcggcgcc
atgctcgacctgctggccagcgaggagtgcctgagctggcgcctggcgcattacttcggt
gacgaacaggcgccccggcagtgtggccattgctcggtgtgcgccggccgcgtcgcccat
ctgccggagccacctgcgctgccgccgctggacggccaatccctgcacaaccgctgcgcc
gccttcctggagaaataccgcagcgcgcgagggatggcgccgagcgccgactgcttgacg
cgcttcctctgcggcatcagcgtgccggcctttacccgcatgcgcgcccgcaccttgccg
ggctacgcgacgctggaggattacccctacgcccgcgtgcgcaactgggtgcaggcgcag
ctgtaa
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