Paenibacillus swuensis: SY83_11380
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Entry
SY83_11380 CDS
T04884
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pswu
Paenibacillus swuensis
Pathway
pswu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pswu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SY83_11380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswu03021
]
SY83_11380
03400 DNA repair and recombination proteins [BR:
pswu03400
]
SY83_11380
Enzymes [BR:
pswu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SY83_11380
Transcription machinery [BR:
pswu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SY83_11380
DNA repair and recombination proteins [BR:
pswu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SY83_11380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ANE46776
UniProt:
A0A172TIJ6
LinkDB
All DBs
Position
2596563..2600183
Genome browser
AA seq
1206 aa
AA seq
DB search
MMDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIEVDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNFPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGIAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGIFYLTMDNPEAAGSGMIFRNVNEAVSAYQRGTASLHARVAIP
VRALNKESFTDKQQDAMIVTTIGKIIFNEIFPTHFPYINEPSKNNLINGTPDVYFIHEKG
VNVREYIMGLPVVGGVGKDYVGNVIAECFRIYHTTQTSVILDKIKQLGFTYSTKAGITVA
VSDVIVPKEKDEILQESEGKVKVVMNQYRRGLITNEERYDRVIAIWSKTKDEITEVLLKS
MDRFNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFSVSKIQDGKEVIEDL
FDRIEGRYSFETIRHPQTGEVIVNRNDLIDSNKADEIIAAGVTKLSIRSVLSCRARHGVC
KTCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIITEFDGVVKEIREAKDRREIEIIGEAESKVYAVTYGSRIRVSEGQQVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMVRQMLRKIRV
IDSGNTKLLPGSFTDIHEYEEANREVLLNGEEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMHRYRNIKLADPAGEELESVDPEL
ETVTVE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgatggacgtaaacaacttcgaatttatgaaaattggtctggcatcgcctgacaaaatt
cgttcttggtcccgcggagaagtaaagaagccggaaacgatcaactacagaacattgaag
ccagagaaagaagggctgttctgtgagaaaatcttcgggcctacgaaggactgggagtgc
cattgcggcaaatacaagcgtgtacgttataaaggtgtcgtctgtgatcgctgcggcgtt
gaagtaacgcgcgccaaagtgcgtcgtgagcgtatgggtcatattgaattggctgcgcct
gtatctcatatctggtatttcaaagggatcccgagcagaatgggtctcgctctggatatg
tcgccaagatcgctggaagagattatttacttcgcatcttatgttgtaaccgatccagga
gatacacctctggagaaaaagcagcttctgtccgagaaagaatatcgcagttaccgtgag
aagtatggctatggattccaagccggcatgggcgccgaagcggtgaagaagcttcttcag
gatattgaggtcgacaaagaacttgaattcttgaaagaggaacttcgcacagcccaaggc
caacgccgtaaccgtgcgattaagcgtttggaagtcattgaagccttccgtaactccggg
aatttcccggattggatgattctcgacgtgttgccggtcattcctcctgagctgcgtccg
atggttcagctagacggcggacgtttcgcaacgtctgaccttaatgacctttatcgtcgt
gtgatcaaccgtaataatcgcttgaagcgtttgctcgacctcggcgcgccggatattatc
gtgcagaacgagaaacgtatgcttcaagaagcggttgacgctttgattgacaacggtcgt
cgcggacgtccggtaacgggtccgggtaacagacctttgaaatcgctcagccacatgctg
aaaggtaaacaaggccgtttccgtcagaacttgctgggtaaacgggttgactactccggt
cgttccgttatcgttgttggtcctagcttgaagatgtaccaatgcggtcttcctaaagag
atggcactagagttattcaagcctttcgttatgaaagaattggtcaacaaaggcatcgcg
cacaacatcaagagcgcgaagcgcaaagtagaacgcgtttcccctgaagtgtgggacgtt
cttgaagaagtaatcaaggagcatccggttcttctgaaccgcgcacctacattgcataga
ttaggtattcaggcgtttgaaccgatcctggttgaaggacgcgccatcaagctgcatccg
ctcgtctgtaccgcctacaacgcggatttcgacggtgaccaaatggctgttcacgtacct
ttgtccgcggaagctcaagctgaagcccgtattctgatgcttgcctccggcaacattctg
aatccgaaggacggtaaaccggttgtaaccccatctcaggatatggtacttggtatcttc
tatctgacgatggacaatccggaagctgccggctcaggcatgattttccgtaatgttaac
gaagccgtttccgcttaccaacgcggtaccgcatcgttgcatgctcgtgttgcgattccg
gtcagagctctgaacaaagaatctttcaccgacaagcaacaagatgcaatgatcgtcaca
acgatcggtaaaattatctttaacgagatattcccgacgcatttcccttatattaacgag
ccaagtaagaacaacttgattaacggaacgccggatgtatacttcatccacgagaagggc
gtaaacgttcgcgaatatattatgggtcttccggttgtcggcggcgtcggcaaggattat
gtgggtaatgtgattgcggaatgtttccgtatttaccatacaacacagacttccgtcatt
ctcgacaagatcaaacaacttggtttcacgtactcgactaaagcgggaatcacggttgcc
gtatcggacgttatcgtaccgaaggagaaagacgagattcttcaggagtccgaaggtaag
gttaaagtcgttatgaatcagtaccgtcgcggtctgatcacgaacgaagagcgttatgac
cgcgttatcgcgatctggagtaagaccaaggatgagattacagaagtattgcttaaatcc
atggatcgctttaactcgatcatgatgatggttgattccaaggcgcggggtaacaaatcg
cagattacccaattgggcggtatgcgtggtctgatggccaacccatccggtcgtattatc
gagttaccgattaagtccaacttccgtgaaggtctgacggttttggaatactttatctct
acgcatggtgcccgtaaaggtttggccgatacagccctgcgtacggcggattcaggttac
ctgactcgtcgtctggtagatgtggcccaagacgttatcgtccgtgaagaggattgcggt
acggataaaggcttcagtgtcagcaaaattcaagacggtaaagaagtcattgaggatctg
ttcgaccggattgaaggacgttattccttcgagacgattcgtcatccgcaaactggcgaa
gttatcgtgaaccgcaacgacctcatcgattccaacaaagccgatgaaattatcgctgca
ggcgtaacgaagctttccattcgttccgtattgagctgccgcgcgcgacatggtgtctgc
aaaacttgttacggacgtaacctggctactggtaaacacgttgagattggtgaagcggtt
ggtattatcgcagcgcaatccatcggtgagccgggaacccagctgacgatgcgtacgttc
cataccggcggtgtagccggagacgatatcacgcaaggtttgccgcgtatccaagagttg
ttcgaggcgcgtaatcctaaaggtcaagcgatcatcacggagtttgacggtgttgttaaa
gaaatccgtgaagcgaaagaccgccgtgagattgaaatcattggtgaagccgaatccaaa
gtatacgctgttacctacggttcccgtattcgcgtaagcgaagggcaacaagtggaagca
ggagatgaacttacggacggttccatcgatccgaaagaaatgctgcgtattaaaggcatc
cgcggcgttcagaactatattcttcaagaagtacagcgcgtttatcgaaaccagggtgtt
gagatcaacgacaagcatattgaagttatggttcgccagatgttgcgcaagatccgtgtc
attgattccggtaacactaaacttctgccgggctcctttaccgacattcatgagtatgag
gaagcgaacagagaagtgctgcttaacggagaagagcctgccgtggctaaaccggtattg
ctcggtatcaccaaggcttccctggagaccgactccttcctgtctgcggcttccttccaa
gagacaacaagagttcttacggatgcggcaatcaagggcaaggtggatcaacttctcggc
ttgaaagagaatgttattatcggtaagctgattcctgcgggtacgggtatgcaccgttac
cgcaatattaaattggctgatccggccggcgaagagttggaatccgtggatccggaatta
gaaaccgttactgtagaatag
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integrated database retrieval system
