Providencia stuartii ATCC 33672: DR96_787
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Entry
DR96_787 CDS
T03282
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psx
Providencia stuartii ATCC 33672
Pathway
psx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR96_787 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psx03019
]
DR96_787 (rnr)
03016 Transfer RNA biogenesis [BR:
psx03016
]
DR96_787 (rnr)
Enzymes [BR:
psx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DR96_787 (rnr)
Messenger RNA biogenesis [BR:
psx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DR96_787 (rnr)
Transfer RNA biogenesis [BR:
psx03016
]
Prokaryotic type
tRNA degradation factors
DR96_787 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AIN62583
LinkDB
All DBs
Position
complement(854879..857353)
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AA seq
824 aa
AA seq
DB search
MSRDPFQEREAEKYDSPIPSREFILELLTKRSAPAKREEIAQLLNLSSEEELEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGYGFLRVEGKKEDYYLSQDEMKRALH
GDVILAQAYGQDRKGRTEVRVVRVLEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
DQINGARMGNVVVVELITRPQRRSQAVGHIIEVLGESMGTGMAVEIALRTHEIPHTWPPQ
VEKQVADLNEQVPESAKKGRVDLRDLPLVTIDGEDARDFDDAVHCAPKKGGGWRLWVAIA
DVSYYVRQQTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPGVDRLCMVCEMTVS
ASGRLSSYKFYEAVMNSHARLTYTKVWKILQGDEELREHYKALVPHIEQLHALYKTLDNA
RIDRGAISFESEEAKFIFNAERRIERIEPVERNDAHKLIEECMILANIAAARFVEKHEEP
ALYRVHDRPKEESVMNLRSVFSELGLTLPGGMKPEPKDYAQVMNEVADRPDHELLQTMIL
RSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLTLHRGIKYLLAKEQGHTDHRWTPT
GGWHYDMDSMLQLGEHCSMTERRADEATRDVADWLKCDFMQDQVGQVFTGLITSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDAVGQRLIGESSGTTYRLGDEVEIRVEAVHMDERT
IDFALISTTRKAKNPGKTARDKMKKEVKNATKSARGKRDVSRDKNFEPDSAFRRSDKNGK
KTDKKAGKKAETKAKGKKASDKTKKISAKLKAKRAAKKAQKQEG
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcgatccttttcaggaaagagaagcagaaaaatacgactccccaattcctagc
agagaattcattctcgaactcctcactaagcgctcggctccagcaaaacgtgaagaaatt
gcacaattattaaacctctcttctgaagaagagttagaagcattacgccgtcgcctgcgt
gcaatggagcgtgatgggcaattggtgtttacccgccgccaatgttacgcactacctgag
cgtttagacctcctcaaaggaaaagtaataggtcaccgtgatggttatggcttcttgcga
gttgaaggtaaaaaagaagattactatttgtcacaagacgaaatgaaacgtgcattgcac
ggtgatgttattttagcacaagcttatggtcaggaccgtaaagggcgtacagaagtacgt
gtggtccgtgtccttgagcctcgtaataaccaaattgttggtcgctattttattgagtca
ggtatggggtttgttgtgcctgatgatagccgcttaagcttcgatattttgatccctaaa
gaccaaattaatggcgcgcgaatggggaacgtggtggtggttgaattaatcacgagacca
cagcgtcgctctcaggcggtaggtcatattattgaagtattaggggaaagtatgggaacg
ggaatggcagtcgaaattgccttgcgtacccatgaaatcccacatacatggccccctcaa
gtggaaaagcaggtcgctgacctaaatgaacaagtaccagagtctgctaaaaaaggccgc
gtcgatttacgtgatttgccactcgtgactatcgatggtgaagatgctcgtgactttgat
gatgcagtacactgtgcgccgaaaaaaggcggtggctggcgcttgtgggttgcgatagct
gatgttagctattatgtccgtcaacaaaccgcccttgatgatgaagcgcgtagccgcggt
aactcggtctatttcccatcacaagttgttccgatgttaccggaagtgttatcgaacggc
ctgtgttcactgaatccaggtgtcgatcgcttgtgtatggtatgcgaaatgaccgtgtcg
gcatctggtcgcttatcatcatataaattctatgaagcggtgatgaactctcacgcaaga
ttaacctacactaaagtatggaaaatcttgcaaggtgatgaagagctacgcgaacactac
aaagcattagtgcctcatattgaacagcttcatgctctgtataaaacgttagataatgca
cgtattgaccgcggggccatttcttttgaatctgaagaagcgaagtttatctttaatgct
gaacgtcgtattgagcgtattgagcctgtagagcgtaatgatgctcataaactgattgaa
gagtgtatgatcttagccaacattgcggcggctcgttttgttgaaaaacatgaagagcct
gcattgtatcgtgtgcatgatcgcccgaaagaagagagcgtgatgaatttacgttctgta
tttagtgagttagggttaaccttgccgggtggaatgaaaccggagccgaaagattatgca
caggtcatgaatgaagtggctgaccgtcctgaccatgagttgctgcaaaccatgatcttg
cggtcaatgaagcaagccatttatgatccagaaaaccgaggtcactttgggcttgcttta
aaatcctacgctcactttacatcgccaattcgtcgttatcctgatctaacgttgcataga
ggtatcaagtacttactggctaaagagcaggggcataccgatcatcgttggacgccaaca
ggtggctggcactacgatatggatagcatgttgcagttaggtgaacattgctcaatgact
gagcgccgtgccgatgaggcgactcgcgatgtggcggattggttaaaatgtgactttatg
caagaccaagttggtcaagtgtttactgggttgattaccagtgtgacaggctttggcttc
tttgtacgccttaatgatttgttcattgatggcttagtgcatgtttcgacgctggataac
gattactatcgctatgatgctgtgggtcaacgtttgattggtgaatcatcgggaaccaca
tatcgacttggtgatgaagttgaaattcgtgttgaagccgtgcatatggatgagcgtacg
attgatttcgcgttgatttcaacgacacgtaaagctaaaaatccgggtaaaacagcccgt
gataaaatgaaaaaagaagtcaaaaatgccactaaatccgcgcgtggtaaacgcgatgta
agccgagataaaaacttcgagcctgattcagcattccgtcgctcagacaaaaatggcaag
aaaacggataaaaaagcgggtaagaaggcagagacaaaggcgaaaggtaaaaaagcctct
gacaaaacgaagaaaatcagtgcaaaattaaaagcaaaacgtgcagcgaaaaaagcccag
aagcaagaagggtaa
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