Pseudochrobactrum sp. XF203: LDL70_00510
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Entry
LDL70_00510 CDS
T10521
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL70_00510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psxf03019
]
LDL70_00510
03009 Ribosome biogenesis [BR:
psxf03009
]
LDL70_00510
Enzymes [BR:
psxf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDL70_00510
Messenger RNA biogenesis [BR:
psxf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL70_00510
Ribosome biogenesis [BR:
psxf03009
]
Prokaryotic type
rRNA helicases
LDL70_00510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Snapin_Pallidin
Motif
Other DBs
NCBI-ProteinID:
UCA45794
LinkDB
All DBs
Position
125029..126867
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AA seq
612 aa
AA seq
DB search
MTLPSTIAPALAGALTARGYEELTSVQEAMLTPDNDGRDLLVSAQTGSGKTVAFGIAMAP
DLLEQGDRLEAPRAPLALIIAPTRELALQVARELEWLYAPTGARITTCVGGMDIRTERRN
LERGAHIIVGTPGRLRDHITRRALNMSDLRAVVLDEADEMLDLGFREDLEFILGEAPEDR
RTLMFSATVSKSIALLAKRFQKDALRITATASHEKHADITYQAMIVPPHERENAIINTLL
YYDNVNTIIFASTREGVKHLASRLSNRGFSVVALSGELSQAERTNALQSMRDGRARVCVA
TDVAARGIDLPNLDLVIHADLPNNGETLLHRSGRTGRAGRKGTCILVVPFSRRRSAERLL
QMTRLDAKSIAAPTINAVQEKVREVILSNERLSDEIPEDMQELMRELQARYTPEQIAAAY
LRREIESRPAPEDVSEGPVRALGAPARERGERGERSERAPREDRSSFNGGAWFTLSAGRK
HRADPKWILPLICKAGQVSKGDVGAIRILENETRFEINSEKAKEYFATVEEQGTGEKGLV
IRTSTAPEQESRGPRSDRGGERRFDKRGGDDKPGWGAPKGKSRFKGGEGKPYGDKPKGPR
KPREGGDRKFSR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgccttctactattgcacctgcccttgccggtgcgctcacagctcgtggctat
gaggaactgacctccgttcaggaagctatgctgacgcctgacaatgacggtcgcgatctg
ctggtttctgctcagaccggctccggtaaaactgttgcctttggtattgccatggcgcct
gatctgctcgaacagggcgatcgtctggaagccccgcgtgcgccattggctctgattatt
gccccgacacgcgaactggctttgcaggttgcccgcgagctggaatggctctacgcacca
acgggtgcccgcatcaccacttgcgttggtggtatggatatccgtaccgaacgccgcaat
ctggaacgcggtgcacatattatcgttggtacaccgggtcgtctgcgcgatcatatcacc
cgtcgtgcgctgaatatgtctgatctgcgtgccgttgtgcttgatgaagccgatgagatg
cttgatctcggtttccgcgaagatctggaattcatcctcggtgaagcaccggaagaccgc
cgcacactgatgttctcggcaaccgtttccaaatccattgctttgcttgccaagcgtttc
cagaaagatgcattgcgcattactgcaaccgccagccatgaaaaacacgctgatattacc
tatcaggcaatgattgtgccgccgcatgagcgcgaaaacgcgatcatcaacacgctgctc
tattatgataatgtcaacactattatctttgcttccacccgtgaaggcgtgaaacatctg
gcaagccgtctgagcaatcgcggtttctcggttgtggcgctgtccggtgaattgtctcag
gctgagcgtaccaatgcactgcaatccatgcgcgatggccgtgcccgcgtttgcgtagcg
actgacgttgctgcacgcggtattgatctgccaaatctcgatctggttattcacgccgat
ctgccgaataatggtgaaacattgctgcaccgctccggtcgtaccggtcgtgccggtcgt
aagggcacctgtattctggtggttcctttctcccgtcgccgttcggctgagcgtctgctg
cagatgacacgtctggatgccaagagcattgcagcgccgaccattaatgcggttcaggaa
aaagttcgtgaggttatcctcagcaacgaacgcctcagcgatgagattcctgaagacatg
caggaactgatgcgcgaattgcaggcgcgttatacgcctgaacagatcgcagccgcttat
ctccgtcgtgaaattgaaagccgtccggcaccggaagatgtttctgaaggtccggtacgc
gccttgggtgcaccggcacgcgagcgcggtgaacgtggcgaacgctccgagcgtgctccg
cgtgaagaccgttcctccttcaatggcggtgcatggtttacactgtcggctggtcgcaaa
catcgtgccgatccgaaatggattctgccgctgatctgtaaagccggtcaggtttccaag
ggtgatgtcggtgcgatccgtattctcgaaaatgaaacccgtttcgagattaacagcgaa
aaagccaaagaatattttgcgactgttgaagaacagggtaccggcgaaaaaggtctggtg
atccgcacttcaaccgcacctgagcaggaaagccgtggcccgcgttctgatcgcggtggt
gagcgtcgctttgacaagcgcggtggtgatgacaagccgggctggggcgcgccgaaaggc
aaatcccgctttaaaggtggcgaaggcaagccttacggcgataagccaaaagggccgcgc
aagccacgtgaaggcggcgatcgtaaattctcccgctga
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