Pseudochrobactrum sp. XF203: LDL70_05485
Help
Entry
LDL70_05485 CDS
T10521
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL70_05485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psxf03019
]
LDL70_05485
Messenger RNA biogenesis [BR:
psxf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDL70_05485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Regulator_TrmB
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
UCA47178
LinkDB
All DBs
Position
1236762..1238381
Genome browser
AA seq
539 aa
AA seq
DB search
MNLAMYGYGPEHAREWIIIDMGVSFAGPELPGADLILPDIRYLEAERNNIRGIIITHAHE
DHYGSLLDLWPRLRLPVYATPFTAGLLEAKRQAEYNAPEIPVTVFRAGESFEVGSFKIEA
LAVTHSIPEPVSLAITTPLGRVIHTGDWKIDPEPSLGPVLDETRFEQLGNEGVLALVCDS
TNAMREGESPSERQVSESLRELIENAKGRVAITTFSSNVGRIRSIAEAARDAGRQVLVVG
RSMKRCISVATELGYMEGLPEFLSEEDYGYVPRENVVMVLTGSQGEPRAALAKLARDEMR
SLALTAGDTVIFSSRTIPGNEKSIIEIKNMLIEQGIKIISDDDALVHVSGHPRRNELKRM
YAWVRPQILVPVHGEAAHLVAQGTLGIQAGIPDVAQVRNGDVLRLAPGPAKIIDEAPYGR
IYKDGRLIGDEDEMGITERRKLAYVGHVAVSILLDNQHKIYDEPEVVAFGLPEEDSQRNL
IEDLLYDAVVSAVDSIPRARRKDIELVREAARRAVRAAANDVWGKKPVTTVFVTRIPEA
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcgcaatgtatggctacgggccggagcatgcgcgtgaatggatcattatcgat
atgggcgtgagttttgcaggtcctgaattgccgggggctgacctgatcctgccggatatc
cgctatctggaagccgagcgtaataatatccgcgggattattattacccacgcgcacgaa
gatcattatggctcgctgctggatctctggccgcgtctgcgcctgccggtttatgcgacc
ccgtttaccgccggattgctcgaagccaaacgtcaggctgaatataacgcgcctgaaatt
ccggtaactgtgttccgcgccggtgaaagttttgaagtaggcagcttcaagattgaagcg
ctggccgttacgcactccattcctgagccggtatcgctggcgattactacgccgcttggc
cgtgtgatccatacgggtgactggaaaatcgatccggagccgtcgctcggccccgtgctc
gacgaaacccgttttgaacagctgggtaatgaaggtgtgctggcactggtctgcgacagt
accaatgcgatgcgcgagggtgaatcgccgtccgagcgtcaggtatcggaaagcctgcgt
gagctgatcgaaaatgccaaaggccgtgtggcaatcaccacattctcttccaatgtcggg
cgtatccgctcgattgccgaagcggcgcgtgatgccggtcgtcaggtgctggtggttggc
cgttcgatgaagcgctgtatctcggtggcaaccgagctcggctatatggaaggcctgccg
gaattcctttccgaggaagattacggctatgtcccgcgtgaaaatgtggtgatggtactg
accggcagtcagggtgagccacgcgctgcgcttgccaagctggcgcgcgatgaaatgcgc
tcactggctttgaccgccggtgatacggtgattttctcgtcccgtactattccgggcaat
gaaaaatcgatcattgaaatcaaaaacatgcttatcgagcagggcatcaagatcatttcg
gatgatgatgcgcttgtgcatgtttccggtcatccgcgccgcaatgagctgaagcgcatg
tatgcgtgggtgcgcccgcaaattctggtgccggtgcatggtgaagccgcgcatctggtt
gcgcagggcacattgggcatacaggccggtattccggatgtggcacaggtgcgtaacggt
gatgtgctgcggttggctccggggcctgcaaagattattgatgaagcaccttatggccgc
atctataaagatggtcgcctgatcggtgatgaagatgaaatgggcatcaccgagcgccgc
aagctggcctatgtcggtcatgtggcggtgtccattcttctcgataatcagcataaaatc
tatgatgagccggaagttgtggcctttggtttgccggaagaagacagtcagcgcaatctg
attgaagacctgctctatgatgcagtcgtcagcgctgttgacagcattccgcgcgcgcgt
cgcaaggatatcgagctggtgcgtgaagccgcgcggcgtgcagtgcgtgctgcggccaat
gatgtctggggcaaaaagccggtgaccacagtttttgtcacccgtattccggaagcctga
DBGET
integrated database retrieval system
