Pseudochrobactrum sp. XF203: LDL70_05525
Help
Entry
LDL70_05525 CDS
T10521
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf03030
DNA replication
psxf03430
Mismatch repair
psxf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL70_05525 (dnaE)
03430 Mismatch repair
LDL70_05525 (dnaE)
03440 Homologous recombination
LDL70_05525 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psxf03032
]
LDL70_05525 (dnaE)
03400 DNA repair and recombination proteins [BR:
psxf03400
]
LDL70_05525 (dnaE)
Enzymes [BR:
psxf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LDL70_05525 (dnaE)
DNA replication proteins [BR:
psxf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LDL70_05525 (dnaE)
DNA repair and recombination proteins [BR:
psxf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LDL70_05525 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
McdB_C
T2SSK
Motif
Other DBs
NCBI-ProteinID:
UCA46684
LinkDB
All DBs
Position
1246607..1250110
Genome browser
AA seq
1167 aa
AA seq
DB search
MPLPSDVSAVAASELPAGAPVFIHLRTHSAYSLLEGALQIGKIIGHAKDDNAPAIAVTDT
NNLFGALEFAQKASKDGVQPIIGCVVDIAFGDHQPEGRAINRRDALDLSPVVLLASSEEG
YANMVRLVSRSYLETEAGDPVHIRADWLPDLSEDVIFLTGGAEGPIGKPLSNEREERARS
RLEFLKNIFGDRLYVELHRQRGYDRVLESKLVDLAYEYELPLVATNEAFFKQSGDYEAHD
ALLAIADGQVIASDDRRRLTPDHYLKSQSEMAALFADLPEALENTVEIARRCHWYTQTRA
PILPRFTGESDDPEAALQAEADEMARQAREGLEERLKLFGLAEGHTHEDYIKRLDYEISI
IVRMKFPGYFLIVSDFIKWAKLQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERF
LNPDRVSMPDFDIDFCQDRREEVIRYVQQKYGRDQVAQIITFGTLQARAVLRDVGRVLQM
PYGQVDRLCKLVPSNPANPVSLGQAINEEPRINEEREKEPVVGRLLDMSLKLEGLYRHAS
THAAGIVIGDRPLSELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLNTAV
KLIARKGVDIDLQTLPFDDKLTYEMLSRGETVGVFQVESVGMRKALIGMKPDRIEDIIAL
VALYRPGPMENIPTYNARKHGEEEIASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYS
LGEADLLRRAMGKKIREEMDKQRVRFVDGAIEGGVGKAQANTIFDLLAKFADYGFNKSHA
AAYAIVSYHTAYLKAHYPAEFLAASMTYDMNNTEKLNDFRRDALRLGIEVVLPSVMTSYR
PFEVGEGKIFYSLAAIKGVGDAAVEHIVEKRKEKPFESLEDFCERVDPRMVNRRVFESLI
NAGALDCFGVDRSALSSGMDSLMAYTQRTQENANSGQSDIFGTGLVPKEKLQLPVVTPWT
SSEKLHRELQAAGFYLSAHPLDDYNEALQKMRVQSWADFSNAVKKGATNGRLAGTVISKQ
ERKTKTGNKMGIIAFSDATGQFESVLFSEALQQFRDLLEPGRSVVITVSAENRPEGVSLR
IATVVSLEDEASRLQKALRLFLRNSDALDQIVPYFKTRGDGEVSFIVIKDNGQREVEVAL
PDRYRISPQIASAMKAISGVVDVELIS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgccttctgatgtttctgccgtagctgcttctgaattacctgccggtgcgccg
gtatttattcatttgcgtacgcattcggcttattcattgctggaaggggcattgcaaatc
ggcaaaattatcggccatgccaaggatgataatgcgcctgcaattgccgtaacagacacg
aataatctcttcggcgcattggaatttgcgcagaaggcgtcgaaagatggtgtgcagccg
attatcggctgtgttgttgatattgcctttggcgaccatcagccggaaggccgtgcgatc
aaccgccgcgatgcgctggacttgtcgccggtggtactgctggcttccagtgaggaaggc
tatgccaatatggtgcggctggtcagccgttcctatctggaaacagaagccggtgatccg
gtgcatattcgcgccgactggttaccggatttgtcagaggatgtgatttttctgaccggc
ggggcagaggggccgattggcaaaccgctcagcaatgaacgggaagagcgtgcgcgcagc
cgccttgagtttttaaaaaacatctttggcgaccgtctttatgtcgagttgcaccgccag
cgcggttatgaccgtgtgcttgaatccaaactggttgatctggcttatgaatatgagctg
ccattggttgcaaccaatgaggcattctttaagcagagcggagattatgaggcgcatgat
gctttgctggcgattgcagatggtcaggtcattgcatcggatgaccgccgccgtctgaca
ccggatcattatctgaaatcccagagcgaaatggcggctttgtttgccgatttaccggag
gctctggaaaataccgtcgagattgcacgtcgctgccattggtacacgcaaacccgtgcg
ccgatcctgccacgctttaccggtgaatccgatgatccggaagccgctttgcaggcagaa
gcggatgaaatggcgcgtcaggcacgtgaaggtcttgaagagcggttgaagctgttcggc
cttgctgaaggccatacacatgaagactatattaaacggctggattatgagatttcgatc
atcgtccgcatgaaatttccgggttacttcctgatcgtttcggactttattaaatgggcg
aaactgcaggatattccggtagggccggggcgtggttccggtgcgggctcgttggttgct
tatgcgctgacaattacggacgtggacccgctgcgtttctctctgctgtttgagcgcttc
cttaatccggatcgtgtgtcgatgccggactttgatatcgacttttgtcaggatcgccgt
gaagaggtgatccgctatgtgcagcagaaatacggccgtgatcaggtagcgcagattatc
actttcggtacgttgcaggcgcgtgcggttcttcgcgacgttggtcgcgtgctgcaaatg
ccttacgggcaggtcgacaggctgtgtaaattggtgccgtcgaaccctgccaatccggta
tcactcggacaggcgattaatgaagagccgcgcattaatgaggagcgtgaaaaggagccg
gttgtcggtcgtcttctcgatatgtcgctgaagctggaagggctttatcgtcacgcttcc
acgcacgctgcaggtattgttatcggtgaccggccattgtctgaactggtgccgatgtat
cgcgatccgcgctccgatatgcctgtcacccagttcaatatgaaatgggttgagcaggcc
ggtctagtaaagttcgactttcttggtctgaaaacgctgacggttctgaatacggctgtg
aagctgattgcccgtaaaggcgtcgatatcgatctgcaaacgctgccgtttgacgataag
ctgacttatgaaatgctgtcgcgcggtgaaacggtcggcgtgtttcaggtggaatcggtg
ggtatgcgtaaagcgctcatcgggatgaaacctgaccgtattgaggatattattgcgctt
gtggcgctctatcgtccgggtccgatggagaatattccaacctataatgcgcgcaagcat
ggtgaggaggagattgcctctattcacccgaaaatcgaccatctggtgaaggaaacgcag
ggcgttatcgtttatcaggagcaggtgatgcagatcgcgcaggagctttccggctattcg
cttggtgaagcggatttgctgcgccgcgcgatgggtaagaaaatccgcgaggaaatggac
aagcagcgcgtccgtttcgttgacggcgcgattgaaggcggtgtcggcaaggcgcaggcc
aatacgattttcgatctgcttgccaaatttgctgactatggtttcaacaaatcccacgct
gcggcttatgcgattgtttcttatcatactgcctatctgaaggcgcattatccggcagag
tttctcgccgcgtcgatgacctatgatatgaacaacacggaaaagctcaatgatttccgt
cgtgatgccttgcgtcttggtattgaggtggtgctgccgtcggtcatgacatcctaccgc
ccgtttgaggtaggcgaaggtaagattttctattcgctggccgcgatcaaaggcgttggt
gatgctgccgttgagcatattgttgaaaagcggaaagaaaaaccgtttgaaagccttgag
gatttctgtgagcgcgttgatccgcgcatggtcaaccgccgtgtgtttgaaagcctgatt
aatgccggtgcgctggattgtttcggtgtagatcgttcagctttgagttccggtatggat
agcctaatggcctatactcagcgcacgcaggaaaatgccaatagcgggcagtcggatatt
tttggcaccggtctggtgccgaaagaaaagctgcaattgccagtggtaacaccttggaca
tcatcagagaaactgcatcgcgaattgcaggccgcaggcttctatctctccgcgcatccg
ctggatgattataatgaagcactgcagaaaatgcgcgttcagagctgggctgatttctcc
aatgcggtgaagaaaggcgcaaccaacggtcgtcttgccggtacggttatcagcaagcag
gagcgcaagaccaagaccggcaataagatgggcatcatcgccttttctgatgcgacaggt
cagtttgaatcggtgctgttttcagaggcgcttcagcaattccgcgatctgctggaaccc
ggtcgctcggtagtaattactgtttccgctgagaaccggccggaaggtgtgagcctgcgc
attgccacggtcgtgtcgcttgaggatgaggccagccgactgcaaaaggcactgcgtctg
tttctgcgcaatagcgatgcgctcgatcagatcgtgccttacttcaaaacccgtggtgac
ggcgaggtcagctttatcgtgatcaaggataatggtcagcgtgaggtggaggttgctttg
ccggatcgctaccgcatcagcccgcagatagccagcgcgatgaaggccatcagcggtgtg
gtcgatgtggaactcatcagctga
DBGET
integrated database retrieval system
