Pseudochrobactrum sp. XF203: LDL70_06795
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Entry
LDL70_06795 CDS
T10521
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL70_06795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psxf03019
]
LDL70_06795
Enzymes [BR:
psxf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDL70_06795
Messenger RNA biogenesis [BR:
psxf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL70_06795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Arabino_trans_N
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UCA47201
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All DBs
Position
1537218..1538756
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AA seq
512 aa
AA seq
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MQDTSGFAAKTEDNAGFAALGITGLLLKNLDAAGMTSPKPIQQQSLPAQLKGKDILGIAQ
TGSGKTAAFSLPIIEQILALGDKRLPKTCRALILAPTRELAVQIEETVRVLTKGAHLSTA
LILGGVSRASQVRKMAPGVDILVATPGRLTDLVRDKCVDLSATKWLVLDEADRMLDMGFI
NDVKRIAKATRSDRQTALFSATMPKEIVALAEGLLRDPVRVEVSPAGTTAAEITQVVYTV
PTKDKKKALSGLLTNPKLETVIVFTRTKHGADAVTRTLEKDGYSVAAIHGNKSQNARQRA
LNGFKDRSVRVLIATDIAARGIDVPGISHVINYDLPDEPESYVHRIGRTGRNGASGAAIT
LYDGGTEHAKLKAVERVIRNKLTLKDLPPQFGPLPERTEKPTFEHEWPKPDPRATGKRKT
SRPYKNLDKAPQRTTGFSDVRELYDDAAPAKPREAKPAQGERGRQNRNHSGRGGKSSAQG
AGYNSGQANSGKPANKKTFHRNKKRAGQDWNS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
attcaggataccagcggcttcgccgctaaaactgaagataatgccggctttgccgctttg
ggcattaccggtcttttgctgaaaaatctggatgcagcgggcatgacttcgccaaagcca
attcagcagcaatccctgccagcccagcttaagggcaaagacattctgggtatcgcgcag
accggctccggcaaaactgcggccttctccctgccgatcatcgagcagattctggcactt
ggtgataagcgtctgcctaaaacctgccgcgctctgatcctcgcaccaacccgcgaactg
gctgtgcagattgaagaaaccgttcgtgtgctcaccaaaggcgcacatctttcgaccgca
ttgattttgggcggtgtttctcgtgcctctcaggtgcgcaaaatggcgccgggcgtggat
attctggtggcaacaccgggtcgtctgaccgatctggtgcgtgataaatgcgttgatctg
tccgctactaaatggctggttctggacgaggccgaccgtatgctggatatgggctttatc
aatgatgtgaaacgcattgccaaagcaacgcgctctgaccgtcagacagctttgttctcg
gcaaccatgcctaaggaaatcgtggcactggctgaaggcctgctgcgtgatccggtgcgc
gttgaagtttcgcctgccggtacaactgcagctgaaattacacaggtagtttataccgta
ccgaccaaggacaagaaaaaagcgctgtccggccttttgaccaatccgaagcttgaaacc
gttattgtctttacccgtaccaaacatggcgcggatgcggtaactcgcacgctggaaaaa
gacggctactccgttgctgccattcacggtaacaaatcgcagaacgcccgtcagcgtgcg
ctgaacggctttaaagaccgttctgtgcgcgtgctgattgctactgatattgctgcgcgt
ggaattgacgttccgggtatcagccatgtcatcaattatgacctgccggatgagccggag
agctatgtgcaccgtattggccgtaccggtcgtaatggtgcctccggtgcagcgattacg
ctttatgacggcggtacagaacatgcaaagctcaaggctgtagagcgtgttatccgcaat
aagctgacattgaaagacttgccaccgcagtttggtccgttgccggaacgcacagaaaaa
ccaaccttcgagcacgaatggccaaagcctgatccgcgtgccaccggcaagcgtaaaacc
tcgcgcccgtataaaaatctggataaagcaccgcagcgcaccactggtttttccgatgtg
cgtgaactttatgatgatgccgcacctgccaagccacgcgaagcaaagcctgcacagggc
gaacgtggccgtcagaaccgcaatcattccggtcgtggcggcaaaagctccgctcagggc
gccggttataattccggtcaggccaatagcggcaagcctgcgaataaaaagaccttccac
cgcaataagaaacgtgcgggtcaggactggaacagctaa
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