Pseudochrobactrum sp. XF203: LDL70_08615
Help
Entry
LDL70_08615 CDS
T10521
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL70_08615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psxf03019
]
LDL70_08615
03009 Ribosome biogenesis [BR:
psxf03009
]
LDL70_08615
Enzymes [BR:
psxf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LDL70_08615
Messenger RNA biogenesis [BR:
psxf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDL70_08615
Ribosome biogenesis [BR:
psxf03009
]
Prokaryotic type
rRNA processing factors
LDL70_08615
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UCA44470
LinkDB
All DBs
Position
1896229..1899204
Genome browser
AA seq
991 aa
AA seq
DB search
MSNKMLIDASHPEETRVVVVRGNKIEEFDFESEHKKQLKGNVYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPEADRKALLEAEARAARDEDDEEREEAPRRNRRGHNDRR
GSGRHRHHNNSRDHAAAPAVPAPEFVGDFAAEAQEAYAQALLNAAQEQANDDADDNASVM
AASSDQPVIREKAPRKQHASDSDDDDDHDDEDDQVESVGAEDAMEELPGSNRAHRKHYKI
QEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRK
RLKDIVKELEVPQGMGVILRTAGANRTKAEVRRDYEYLMRMWDNVRQLTMQSQAPALVYE
EGNLIKRSIRDLYNKDITDILVAGEAGYREAKDFMRMLMPTHARVVQPYRETTPIFARNG
IEAQLDRMLHPQVTLKSGGYIIINQTEALVAVDVNSGRSTRENSIEETALQTNLEAAEEV
ARQLRLRDLAGLVVVDFIDMEEKRNNRAVEKRMKDCLKDDRARIQVGRISHFGLLEMSRQ
RIRASVLESTMQPCPHCAGTGLIRSDSSMALYVIRSIEEFLQRNSQNNITVRAPQATALY
VLNHKRHLLAEMESRFGLTIELQIDETVGHQHLAIDKGTPAAGPVNPVPQTIQFMPYDEE
NDPEIIDVEDDAETEATSGDEDNTRDDNNDDRKRSRRRRRRRGARERDNSETQGEAASDE
DEGDDADADDAPSQSEEDRRKKRRRGRRGGRKNRRGEYDNDNRMPAVEFVGFSRDEAVTR
LTAYKQAVKKAAAPLPSPEFVGFNPQVKSAAPAAALTQDAPAKTEAAPQTEAKSEKKTAK
PARKRPAKPRGAKATAETAAETVTEVAEPAAEPAVAEAVVAEAETVSDEAPAKTTRKKAA
EKPAKPARKPRAIKAAEPVAETQAEVAEAVIVTEVAEPAAEQQAEKPARKRSSTQEASKP
VVTSQISQAEKQEEPAEQPKRGGWWQKKGFF
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacaaaatgcttatcgatgcctcccacccggaggaaacgcgcgtcgtagtggtg
cgcggtaacaagatcgaagaattcgattttgaatctgagcataagaagcagttaaaaggc
aatgtatatctggcacgcgtaacccgcgttgagccgtcattgcaggctgcttttgtggaa
tatggcggcaaccgccatggcttcctcgccttctccgaaattcatccggactattaccag
attccggaagctgaccgtaaagcgctgctggaagcagaagcccgcgctgcacgtgatgaa
gatgatgaagagcgtgaagaagcaccacgccgcaatcgccgtggtcacaatgaccgtcgc
ggctcgggtcgtcaccgtcatcacaacaacagcagagatcatgctgcggcaccggctgta
ccggcacctgaatttgtcggtgacttcgctgccgaagcgcaggaagcctatgcacaggca
ttgctcaatgctgctcaggaacaggcaaatgatgatgcagatgataatgcatccgtcatg
gctgcttcttccgaccagccggtaatccgtgaaaaagcaccgcgcaaacagcacgcatca
gacagtgacgacgatgacgatcacgatgatgaagacgatcaggttgaatcggtcggcgct
gaagatgcaatggaagaactgccgggcagcaaccgtgcgcatcgcaagcactacaagatt
caggaagttatcaagcgccgccagattattctggtgcaggtggttaaagaagagcgcggc
aataaaggcgcagctctcacaacctatctgtcgctggcaggccgttattccgtactgatg
ccgaataccgcacgcggtggcggtatttcacgcaagatcaccaatattcaggatcgcaag
cgtctgaaagatatcgtcaaggaactcgaagtgccgcagggcatgggtgtgatcctgcgt
acagccggtgccaaccgcaccaaggcagaagtgcgtcgtgactatgaatatctgatgcgt
atgtgggataatgtccgccagctgaccatgcagtcgcaggcacctgccctcgtctatgaa
gaaggcaatctcatcaagcgttcgatccgcgatctttataacaaggatatcacggatatt
ctggtcgccggtgaagccggttaccgcgaagccaaagatttcatgcggatgctgatgccg
acccatgcgcgcgtcgtccagccttaccgtgaaaccacgccgatttttgcccgcaacggg
attgaagcccagcttgaccggatgctgcatccgcaggttacactgaaatccggcggctat
atcatcatcaaccagactgaagctctggttgcggttgacgtcaactccggccgttcaacc
cgtgaaaattcgattgaagaaactgcattgcagaccaatctggaagccgcggaagaagtt
gcgcgccagctgcgtctgcgcgaccttgccggtctggttgtggttgacttcattgatatg
gaagaaaagcgcaacaatcgtgccgttgaaaaacgcatgaaagattgcctgaaagatgat
cgtgcccgtattcaggttggccgtatttcgcatttcggtcttctcgaaatgtcgcgtcag
cgtatccgtgcatcggttcttgaaagcaccatgcagccttgcccgcattgcgcaggcaca
ggtctgatccgctcggattcctcgatggcgctttatgtcatccgctcgattgaagaattc
ctgcagcgcaattcgcagaacaatattactgttcgcgcaccgcaggccacagcactttat
gtgctgaaccacaagcgccacctgcttgcagaaatggaaagccgtttcggcctgacaatt
gaactgcagatcgatgaaaccgttggtcatcagcatctggcgattgataagggcacaccg
gctgccggtcctgttaatccggttccgcagacaatccagttcatgccttatgatgaggaa
aatgatccggaaatcatcgatgtggaagatgatgcggaaaccgaagcaacatcaggcgat
gaagataacacacgcgacgataataatgacgaccgcaagcgcagccgtcgccgccgtcgc
cgtcgcggtgcccgtgaacgcgataattcggaaacacagggcgaagccgcttctgatgaa
gatgaaggcgatgatgcagacgcagatgacgcaccttcccagtcggaagaagaccgtcgc
aagaagcgtcgtcgcggccgtcgtggcggacgtaaaaaccgtcgtggtgaatatgacaat
gacaaccgcatgcctgcggtggaatttgtcggcttcagccgcgatgaagctgtcacccgt
ctgactgcctataaacaggctgtgaaaaaagctgcggctcctctgccttcaccggaattt
gtgggctttaacccgcaggtgaaatcagcggctccggctgcggccctgacacaggatgct
ccggccaagactgaagcagccccgcagactgaggcaaaatccgagaagaagactgcaaaa
cctgcccgtaaacgccctgcgaagccacgcggtgcaaaagcaacggctgaaaccgctgcg
gaaactgtgactgaagtggcagaacctgccgctgaaccggctgttgcagaagcagtggtt
gcggaagctgaaactgtgagtgatgaagctccggccaaaaccacacgcaaaaaagctgca
gaaaagccggccaagcctgcccgcaagccgcgcgctataaaagcagcggagccggttgca
gaaacacaggccgaagttgctgaagccgttattgtgactgaagtggcagaacctgcggcg
gaacagcaagcagaaaagcctgcccgtaaacgcagcagcacacaggaagcatccaagccg
gttgtgacctcgcagatcagtcaggctgaaaagcaggaagaaccggcagagcagcctaag
cgcggcggctggtggcagaaaaagggcttcttttaa
DBGET
integrated database retrieval system
