Pseudochrobactrum sp. XF203: LDL70_09390
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Entry
LDL70_09390 CDS
T10521
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf03410
Base excision repair
psxf03430
Mismatch repair
psxf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LDL70_09390 (recJ)
03430 Mismatch repair
LDL70_09390 (recJ)
03440 Homologous recombination
LDL70_09390 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psxf03400
]
LDL70_09390 (recJ)
DNA repair and recombination proteins [BR:
psxf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LDL70_09390 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LDL70_09390 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LDL70_09390 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
CDC45
Motif
Other DBs
NCBI-ProteinID:
UCA47230
LinkDB
All DBs
Position
complement(2057215..2059017)
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AA seq
600 aa
AA seq
DB search
MNERLFLGIRSSATGMKWVDRLGLREANTALAIAQNYGIPDLVSRVMAGRGVGLEAAEEF
LNPSIRSLMPDPLTLTDMKQAAVRIADAIQHRENVAIFGDYDVDGACSSALLSRFLNAYD
IKNLIYIPDRIFEGYGPNPDAMRELVAKGASLIVTVDCGTNSAVSITAAKDAGADVVVLD
HHQLGGALPEDAAAIVNPNREDDISGQGHLCAAGVVFMTLVQLARELRERGIKAANGTPD
LLSYLDLVGLATVCDVVPLIGVNRAFVVKGLLAARNQSNAGLAALARVSRIGEPLNSFHF
GFLIGPRINAGGRIGNAALGSRLLTLDDPVEANTIAEELDRLNAERQAMEAIMLQQAEAE
AFAELSGKSGPAVLVTANEDWHPGIVGLLASRLKDKAKRPTFAIAFNGNGVGTGSGRSIS
GFDLGKLVRKAVEQGLLVKGGGHAMAAGITVEKSKLGALRAFFEEQAAEQVDELRAEQSL
AIDGAVSATGATVALYNALEKAGPYGAGHVQPLLALPNHTIADVRVVGRDHVKVALKGLD
GKRVDGIAFRAADSDLGRFLFDQAGHMVHVAGHLSLNHWNGSVSTQIRIVDAAKVDLSRQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagcgtttgtttctcggaatacgttcttctgcaacgggcatgaaatgggtggat
cggttaggtctgcgggaagccaataccgccctcgctatcgcccagaattacggtattccc
gatctggtttcccgcgttatggccggtcgtggcgttggccttgaagccgctgaagaattt
ctcaatccgagtatccgctccctgatgcctgatccgctgactttgacggatatgaaacag
gctgctgttcgtattgccgatgctattcagcaccgtgagaatgtagcaattttcggtgat
tatgacgtcgatggcgcctgttcatcagcgctgttatcccgctttctcaatgcctatgac
attaaaaatctgatctacattccggatcgtatttttgaaggctacggcccgaaccccgat
gccatgcgtgagctggttgccaaaggcgcgtctctgatcgtgactgtggactgcggtacc
aatagtgctgtttcaattaccgctgcgaaagatgccggtgccgatgttgtggttctggat
caccaccagcttggtggtgcattgccggaagatgccgccgcgattgttaatccgaaccgt
gaggatgatatttcagggcaggggcatctctgcgctgccggtgttgtctttatgactttg
gtgcaattggcacgggaattgcgtgagcgcggtattaaagcggcaaatggtacgccggat
ttgctgagctatctcgatctggtgggcttggccacggtttgcgatgtggtgccgctgatc
ggtgtgaaccgcgcttttgtggttaaaggtctgctcgctgcccgcaatcagagcaatgca
gggctggcggcgctggcgcgggtatctcgcattggtgagccgctcaatagtttccatttc
ggctttctcattggtccccgcatcaatgcgggcgggcgtatcggcaatgctgctttgggt
agccgtttgctgacattggatgaccctgttgaagccaataccatcgccgaagaactggac
aggctgaatgccgagcgtcaggcgatggaagcaataatgttgcagcaggcggaagcggaa
gcctttgctgagctttccggcaaatcgggacctgcggttctggtcactgccaatgaagac
tggcatccgggtattgttggtctgctggcttcccgtctgaaggataaggcgaaacgtccg
acatttgccattgcctttaatggtaatggtgtgggcacaggatcggggcgttcgatcagc
ggttttgatcttggcaaactggtacgcaaagccgttgaacagggcttgctggtcaaaggc
ggcggtcatgctatggcggcgggtatcacggtggagaaatccaaactcggtgctttgcgc
gcattttttgaagagcaggctgccgagcaggtggatgaactgcgcgctgagcaaagtctg
gcgattgatggtgcggtttctgccacaggtgccacggttgcgctgtataatgctttggaa
aaagcagggccatatggtgctggtcatgtgcagccgctgctggcactgccaaaccataca
atcgctgatgtgcgtgttgtcgggcgcgatcatgtgaaagttgccctgaaagggctggac
ggcaaacgcgtggacggtattgccttccgtgctgctgacagtgatcttgggcgtttcctg
ttcgatcaggccggacacatggtgcatgttgccggccatttatcgctcaatcactggaat
ggctctgtttcaacgcagatccgcatcgtggatgccgcgaaagttgatctctcgcgccaa
taa
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