Pseudochrobactrum sp. XF203: LDL70_10355
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Entry
LDL70_10355 CDS
T10521
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LDL70_10355 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psxf03021
]
LDL70_10355 (rpoD)
Transcription machinery [BR:
psxf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LDL70_10355 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Imm3
DUF5856
EFhand_Ca_insen
Motif
Other DBs
NCBI-ProteinID:
UCA44778
LinkDB
All DBs
Position
complement(2263722..2265743)
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AA seq
673 aa
AA seq
DB search
MATKAKENEEAEVERDGATDGPLLDLSDDAVKKMIKLAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVVEDDEQDADAEERDDDSEESGGDLVEAGGTALATTTTKKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWREALN
DQQILLREIIDLETTYAGPEAKQAPVIERVEEQPARGDDKGGRRSRDDDDITNVGGEIQE
EYDEDEDDEANLSLAAMEAELRPQVMETLDLIADTYKKLRKLQDQQVEGRLAAAGELSTS
QERRYKELKDQLIKAVKSLSLNQNRIESLVEQLYDINKRLVQNEGKLLRLAESFGVRREE
FLKEYQGNELDPNWTDRLATLTARGWKDFVAKEKRGIDNLRSEIQNLATETAISIGEFRR
IVNQVQKGEREATIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTP
EELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANL
RDTTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKH
PSRSRKLRSFLDS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaggcaaaggaaaacgaagaagctgaagtcgagcgcgatggcgcgaccgat
gggccgcttctcgacctttcggacgacgctgtcaagaagatgattaagctcgccaagaag
cgtggctatgtcacgatggacgagctgaatgccgtgctgccttctgaggaagtcacatcc
gagcagatcgaagatacaatgtcgatgttgtccgatatgggcatcaatgttgttgaagat
gacgagcaggatgctgacgcagaagagcgcgacgatgacagcgaagaaagcggcggtgat
ctggtagaagccggcggtaccgcgctggcgacaacgaccaccaaaaaagagccgacagac
cgtaccgatgatccggtgcgtatgtatctgcgcgaaatgggttcggttgaacttctgtcg
cgtgaaggtgaaatcgcgattgccaagcgtattgaggctggccgcgaaaccatgattgca
gggctttgcgaaagcccgctgacatttcaggctctgattatctggcgtgaagcactgaac
gaccagcagattttgctgcgcgaaatcattgatcttgaaactacttatgcgggtcctgaa
gccaaacaggcaccggtgatcgagcgtgtggaagaacagcctgcgcgcggtgatgacaag
ggtggccgtcgttcacgcgatgacgatgatatcaccaatgtcggcggtgaaattcaggaa
gaatatgacgaggatgaagatgatgaggccaatctgtcgcttgctgcgatggaagccgaa
ttgcgtcctcaggtcatggaaaccctcgatctgatcgctgatacctataagaaactgcgc
aaattgcaggatcagcaggttgaaggccgtctggctgctgccggtgaattgtcgacctct
caggagcgccgctacaaggaactgaaagatcagctgatcaaggccgttaagtcgctgtcg
ctgaaccagaaccgtattgaatcgctggttgagcagctctacgacattaacaagcgtctc
gttcagaacgaaggcaagctcctgcgtctggcggaatctttcggcgtgcgccgtgaagaa
ttcctcaaagaatatcagggcaatgagcttgacccgaactggactgaccgtcttgcaacc
ctgacagcccgcggctggaaggactttgttgccaaggaaaaacgcggcattgataatctg
cgttcggaaattcagaatctggccactgaaaccgcgatttcgatcggtgaattccgccgc
atcgttaatcaggtgcagaagggcgagcgcgaagcaaccattgccaagaaggaaatggtt
gaagcaaacctgcgtctcgtgatttccatcgccaagaaatataccaaccgtggtttgcag
ttccttgatcttattcaggaaggcaatatcggcctgatgaaggcggttgataagttcgaa
tatcgccgtggttataagttctcgacctatgcgacatggtggatcaggcaggcgattacc
cgttctatcgcggatcaggcacgtaccatccgtattccggtgcatatgatcgaaacgatc
aacaaaatcgttcgtacatcgcgccagatgctgcatgaaatcggccgtgaaccgacaccg
gaagaactggctgaaaagctggctatgcctttggaaaaagtgcgtaaggttctgaagatc
gctaaagagcctatctcccttgaaacgccggtgggtgatgaagaagattcacatctgggc
gatttcatcgaagataagaatgcgctgctgccgattgatgcagccattcaggcaaacctg
cgtgataccacgacccgtgttctggcatcgctgaccccacgtgaagaacgtgttctgcgt
atgcgtttcggtatcggtatgaacaccgaccacacgctggaagaagtcggccagcagttc
tcggttacccgtgagcgtatccgtcagatcgaggcgaaagcactgcgtaagctcaagcat
ccgagccgttcgcgcaagctgcgctcgttcctggatagctaa
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