Psychromonas sp. CNPT3: PCNPT3_02145
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Entry
PCNPT3_02145 CDS
T02515
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psy
Psychromonas sp. CNPT3
Pathway
psy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCNPT3_02145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psy03019
]
PCNPT3_02145
Enzymes [BR:
psy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCNPT3_02145
Messenger RNA biogenesis [BR:
psy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCNPT3_02145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
CMS1
AAA_25
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGH80371
UniProt:
M4U462
LinkDB
All DBs
Position
503599..504879
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AA seq
426 aa
AA seq
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MSFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLL
ANLMKGERAKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLL
RRGVDVLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQ
NLLFSATFSNDIRKLAKGLVNDPVEISVSPRNTTAESVTQFIYEVDKTKKSPLLSTLIKE
NKWKQVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVLVAT
DIAARGIDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLVCEDEFKLLKDIEK
LIKKIIPRKVQPGFEPGTPLPPSVLDSREAKPKKPKKPRVEHKDGQRTGANNGARQSRVR
SNFVGK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgactcccttggtttacctgaagagttgttacgtgcagtaaaagagcaaggc
tacactaagccttcacccatccaagaacaagcaataccggttatattatctggtaaagat
gtgatggcagccgcgcaaacgggcaccggtaaaaccgctggatttaccttgcctttattg
gcaaacttaatgaagggagagcgtgctaaagcaaaccaagtgcgtgtgttaattttaacg
cctacgcgcgagctcgccgcacaaattcatgaaagtgtttgtaattatggtcaaaattta
ccactgcgctctgcggttgtttttggtggcgttaaaataaacccacaaatgcaattatta
cgcagaggggttgatgtattagttgcaacgccagggcgtctattagatctttaccaacaa
aatgcagtacgttttaagcaattagaagtattggtacttgatgaagccgatagaatgtta
gatatgggctttattcatgatattaaacgtatcattaaatttttacctgagaaacgccaa
aatttacttttctctgcgacgttttcaaatgatattcgtaaattggcaaaagggttggta
aatgatcctgttgaaatttcagttagccctcgtaatacaacggctgaaagtgtaacgcag
tttatttatgaagtagataaaactaaaaaatccccattactaagcactttaatcaaagaa
aataagtggaaacaagtgttggtattttcaaagacaaagcatggtgccaatcgcttagtt
aaacaacttgaaggacgtggcattctttctgctgctatccatggtaataaaagccaagcg
gcaagaacgcgcgcattagcctcttttaaagaaggtaaaatcacggtgttagtggcaacc
gatattgctgctcgtggtattgatattgaccaattagagcaagtggttaactttgatttg
cctcatgtgagcgaagattatgtgcatcgtattgggcgtactggccgagcaggtaataaa
ggcgaagctatctctttagtttgcgaagatgaatttaaactattaaaagatattgaaaaa
ttaattaaaaaaatcattcctcgtaaggttcagccgggttttgagccaggtacgccttta
ccgccatcggtgttagattcgcgcgaagcgaagcctaaaaagcctaaaaaaccgagagta
gagcataaagatgggcaacgcaccggagccaataacggtgcaagacaaagccgagtacgt
agtaattttgtcggtaaataa
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