Psychromonas sp. CNPT3: PCNPT3_02310
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Entry
PCNPT3_02310 CDS
T02515
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psy
Psychromonas sp. CNPT3
Pathway
psy03410
Base excision repair
psy03430
Mismatch repair
psy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PCNPT3_02310
03430 Mismatch repair
PCNPT3_02310
03440 Homologous recombination
PCNPT3_02310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psy03400
]
PCNPT3_02310
DNA repair and recombination proteins [BR:
psy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PCNPT3_02310
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PCNPT3_02310
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PCNPT3_02310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGH80404
UniProt:
M4U2F6
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All DBs
Position
544383..546107
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AA seq
574 aa
AA seq
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MPRIKLKQRQRIFLNELTLPCSALLQKLYIDRGITSVSELDLSTKTLLSASSLKGISEAC
SLLYQALLSAKKIVIVGDFDADGATSTALSLLCLRELGFMNVDYLIPNRFDYGYGLTPES
VDLAIAKGAQLLITVDNGISSIKGVAYAKEKGLQVLITDHHLPAEVLPNADVIVDPNQKD
CLFPSKNLAGVGVAFYIMSALRSYMIQKDHFSDKGIRPPTLTKFLDIVALGTVADVVILD
ANNRTLVEQGLMRIRAGACRLGISALIKVAKRAQHSLVASDLGFSLGPRLNAAGRLDEMR
HGVELLLCEDAVQADLLAQELDALNHTRREIEQGMQEEALQALENLALDEKNMPYAICLF
DESWHQGVIGLVASRIKERYYRPTFVFAKANDTEIKASARSIAGIHIRDILDLLDKKMPG
MILKFGGHAMAAGLSIKATDFERFKQGLNEVLASQVDADILQNVLLSDGPLQGKDLTLEQ
AYELRNAGPWGQGFPAPLFDAYFKIIEQRLVGEKHLKMVLECEGTVVDAIAFNVDLDIWP
DPRIRQVFCAYRLDVNEFRGASNVQLLIELLEVR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtattaaattaaagcaacgtcaacgtattttcctcaatgaactcacccttcct
tgctctgcattattgcaaaaactttatattgatcgtggcataacctcggttagcgagtta
gatctcagtaccaaaaccttgttatcagcctcttctttaaaaggtatatctgaagcctgc
tcactattatatcaagcgctattaagtgcgaaaaaaatcgtgattgtaggcgattttgat
gccgacggtgcaaccagtacggcgttaagtctattatgtttgcgtgaattagggtttatg
aacgttgattacttgatacccaatcgttttgattacggttatggcttgacccctgaaagt
gtggatttagcgattgctaaaggcgctcaattattaataacagtggataatggaatttcg
agtattaagggggtggcttacgcaaaagaaaaaggattacaagtccttatcaccgatcat
catttacctgcagaggtattacctaatgcagatgtcattgtcgatccgaatcaaaaggac
tgtttatttccgagtaaaaatttggcgggagtaggcgtcgctttttatattatgtcagca
ttacgctcttatatgatccaaaaagatcacttttcagataagggtatacgccctccgacc
ttaactaaatttttagatatcgtcgccttaggtacggttgccgatgtggtgatcttagat
gcgaataatcgcactttggttgagcaaggtttgatgcgcattagggccggtgcttgccgc
ttaggcattagtgctttaattaaagttgctaaacgcgcgcagcattcattggtggccagt
gatttaggattttctttagggccaagattaaatgcagcgggacgccttgacgaaatgcgc
cacggcgttgaattattattatgtgaagacgcagtgcaagctgatttgttagcacaagaa
ttagacgctctgaatcatacgcgccgtgagatagagcaaggcatgcaagaagaagcctta
caggcattagaaaacttagcgttagatgaaaaaaacatgccttatgcgatttgtttattt
gatgaaagttggcatcaaggcgttatcggtttagtggcctcgcgtataaaagagcgttat
taccgacctacctttgtttttgctaaagcgaatgatactgagataaaagcgtctgctcgc
tctatagctggcatacatattcgcgatatattagatttgctagacaaaaaaatgccaggg
atgatcttgaaatttggtggtcatgcgatggccgctggtttgtcaattaaagcgacggat
tttgaacgttttaaacaaggcttaaatgaagtattagcttctcaagttgacgctgatatt
ttacaaaatgtgttactttcagatggccccttgcagggtaaagatttaaccttggagcaa
gcatatgaactgcgtaatgcagggccatggggacagggctttcccgcgcctttatttgat
gcgtattttaaaataatagagcaacgtttagtgggtgaaaaacaccttaaaatggtatta
gagtgcgaaggtacggtggttgatgcgattgcttttaatgtggatttggatatttggccg
gatcctcgtatacgtcaggttttttgtgcttatcgtctcgacgtaaatgagtttagaggc
gcaagtaatgtacaattattgattgagttattagaggtgcgttaa
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