Psychromonas sp. CNPT3: PCNPT3_09080
Help
Entry
PCNPT3_09080 CDS
T02515
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psy
Psychromonas sp. CNPT3
Pathway
psy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCNPT3_09080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psy03019
]
PCNPT3_09080
03016 Transfer RNA biogenesis [BR:
psy03016
]
PCNPT3_09080
Enzymes [BR:
psy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PCNPT3_09080
Messenger RNA biogenesis [BR:
psy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PCNPT3_09080
Transfer RNA biogenesis [BR:
psy03016
]
Prokaryotic type
tRNA degradation factors
PCNPT3_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
S1_2
DUF3016
KH_SLS1_2
UFL1
Motif
Other DBs
NCBI-ProteinID:
AGH81754
LinkDB
All DBs
Position
complement(2145607..2147709)
Genome browser
AA seq
700 aa
AA seq
DB search
MTPIVKSFQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSIN
PEINPDIVAMIATSAALSISGMPFNGPIGCARVGYIDGQYLLNPTKTELEASDLNLVVSG
TENAVLMVESEAGILSEDVMLGAVVYGHEQQQVVVSAINEFAAEVARPKWDWSAPVRNDA
LDALIATEAQSRIEEAYQISDKGDRYDALKIITSEVKEKLLAADETLEAKQIGEYLHDLE
KTVVRTRIIKGEPRIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRD
AQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPDLEEF
PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGDEFVVLSDI
LGDEDHLGDMDFKVAGTSEGITALQMDIKIEGITKEIMQIALNQAKAARLHILSVMDEAI
SEGRADISEFAPRIHTIKIPTDKIRDVIGKGGATIRALCEETGTTIEIEDDGTVKIAATS
AEQAEDAINRIKTLTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQK
VSDYLKEGQEVKVKVLEVDRQGRVRLSIKEAAEKKDAPVA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgactcctattgtaaaaagttttcagtatggtgagcatacagttaccctagaaacaggt
gtaatggctcgtcaagctaccgctgccgttatgtgtagtatggatgatacttgtgtattt
gtatctgttgttggtaaacaagcaacagacgaagagcgtgattttttcccgctaacagtt
aattaccaagaaaaaacatatgcagcgggtaaaattccgggtggtttcttcaaacgtgaa
ggccgtccaagtgaagaagaaacattgatttcacgtcttattgaccgcccagtacgtcct
cttttcccagcgggttttaaaaacgaagtccaagtgattgcaacagtggtctctattaac
cctgaaattaatcctgatatcgtagcaatgattgcaacgtctgcagcactttctatctct
ggcatgccatttaatggcccaattggttgtgctcgtgttggttatattgatggacaatac
cttcttaacccaactaaaactgaattagaagcaagtgatcttaacttagttgtttctggt
actgaaaatgcagtattaatggttgaatctgaagccggcattttaagtgaagatgttatg
cttggcgctgttgtttatggacatgaacaacaacaagttgttgtcagtgcaatcaatgaa
tttgcagctgaagtagctcgtcctaaatgggattggtctgcaccagttcgcaatgacgca
ttagacgctttaattgcaactgaagcacaatcacgcattgaagaagcataccaaattagt
gataaaggcgatcgttatgacgcacttaaaattatcacttctgaagtaaaagaaaaatta
ttagctgctgacgaaacactagaagctaagcaaatcggtgaatacttacacgatttagaa
aaaacagtagtacgtacacgtattattaaaggtgagcctcgtattgatggacgtgatcct
gaaagtgttcgtgcacttgacgtacgtactggcgtattgccacgtacacatggttcagca
ctctttacacgtggtgaaacacaagcattggttactgcgacattaggtacgcaacgtgat
gcacaaatcattgatagtttgatgggtgagaaaaaagatcacttcttactacattacaac
ttccctccatactgtgtaggtgaaactggttttgttggttctcctaaacgtcgtgaaatt
ggtcatggtcgtcttgctaaacgcggtgttttagcggttatgcctgatcttgaagaattc
ccatacacagtacgtgttgtttctgaaattacagaatcaaatggttcatcttcaatggct
tctgtttgtggcgcatctcttgcgttaatggatgctggtgttccacttaaagcgtctgtt
gcgggtatcgcaatgggtcttgttaaagaaggcgacgaattcgttgttctttctgacatc
ttaggtgatgaagatcatcttggtgatatggactttaaagtggcgggtacctctgaaggt
attacggcattacaaatggatatcaaaattgaaggtatcactaaagagatcatgcaaatt
gcattaaaccaagcgaaagctgcgcgtttacatatcttatctgtgatggatgaagcgatt
tctgaaggtcgtgctgatatttctgaatttgcaccgcgtattcatactatcaaaatccca
acggataaaatccgtgacgttattggtaaaggcggcgcaactatccgtgctctttgtgaa
gaaacgggtacaacgattgaaatcgaagatgatggtactgttaaaattgcagcaacatca
gcagagcaagctgaagatgctatcaaccgtattaaaacattaacggctgaagttgaagta
ggtacgatttacactggtaaagtggtacgtctagctgattttggtgctttcgttaacatt
cttcctggtaaagatggtttagtacatatctcacaaatctgtgaagagcgtgtacagaaa
gtatctgattacttgaaagaaggtcaagaagttaaagtgaaagtacttgaagttgatcgt
caaggtcgcgtacgtttaagtattaaagaagcagctgaaaagaaagatgcacctgtagct
taa
DBGET
integrated database retrieval system
