Psychromonas sp. CNPT3: PCNPT3_10170
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Entry
PCNPT3_10170 CDS
T02515
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psy
Psychromonas sp. CNPT3
Pathway
psy03030
DNA replication
psy03430
Mismatch repair
psy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCNPT3_10170
03430 Mismatch repair
PCNPT3_10170
03440 Homologous recombination
PCNPT3_10170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psy03032
]
PCNPT3_10170
03400 DNA repair and recombination proteins [BR:
psy03400
]
PCNPT3_10170
Enzymes [BR:
psy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PCNPT3_10170
DNA replication proteins [BR:
psy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PCNPT3_10170
DNA repair and recombination proteins [BR:
psy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PCNPT3_10170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGH81972
LinkDB
All DBs
Position
complement(2400054..2403566)
Genome browser
AA seq
1170 aa
AA seq
DB search
MSESSVSHDPKFIHLRVHSDFSMVDGLTKVKALIANTAAMNMPAIALTDQTNFCGLVKFY
TAAHSAGVKPLVGVDFWVQSEILEKEQFRITALAMDNEGYKNITELISKAYFRGHVGGRA
ILDQDWLKEYNHGIILLSGAKEGDLGKMLLKGHFELASEITQFYQTYFPQRYYLELIRTG
RVKEETYIHHALEWAEKHQLPVVATNQVVFSNKTLFDAHVIRVCINQGYTLGDERRPHDY
SEEQYLRSPEEMCELFSDIPEALQNSVEIAKRCNVTLRLGECFLPDFPTQGKPINDYFIE
VSRQGLNARLEFLFDKNSADFAQIRAPYDERLRIELEVINSMGFPGYFLIVMEFIQWSKD
NGIPVGPGRGSGAGSLVAYALNITDLDPLKLDLLFERFLNPERVSMPDFDIDFCMERRDE
VIDHVAQLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDSISKLVPPTPGMTLSK
AFEEEPRLQERYDGSEEVRDLIDMCRTLEGTIRNAGKHAGGVVISPTTITDFAPLYCDDE
GKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMANAHKSDRGEEAIEIERISLTE
PKCFELLKRYETTSVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLGSGMVDNFIE
RKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQILSGYTLGGADMLRRAMG
KKKPEEMAKQRSTFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW
MKTFYPAYFMAAVLSADMDNTDKVVILVSECQRMGLNLCPPDVNEGQFKFNVDKNLRIIY
GIGAVKGVGEGPINAIIEARTIGGDFRDLFDFCNRVDLKHCGKRIIEKLILAGALDNLGP
HRAALMENLPLALASATQHKRAESFGQCDLFGVLTTDSADIENRFSKVEKWPEKQWLAGE
KETLGLYLTGHPINQYEAHIRAFHCKPIVDLSSDRRGQNSRIAGLIIGLRVMVTKAGKRM
GILTVDDRTARIDITIFADLLDQYEALLVMDKVIVLQGQVSEDFFNGGLKMNAREVMSID
QARERFASKLRLKINKEKIADDFQVHFNEALQVAKGGLCPVYIQYTQEKACAELALGLSW
SVTPSDDLLFALQKLLGDDNVSLQFEQITS
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatccagtgtaagtcatgatcctaaatttattcacttaagagtacacagtgac
ttttcgatggttgatggtttaaccaaagtaaaagcgttgattgcaaatacagccgcaatg
aacatgcctgccattgccttaaccgaccaaactaatttttgtggcttagtgaagttttat
actgcagcacatagtgcgggtgtaaagccattggtgggtgtcgatttttgggtgcaaagt
gaaattttagaaaaagagcagtttcgcattacggctcttgcaatggacaatgagggttat
aaaaatataacggagcttatatccaaagcttattttcgaggccatgttggtgggcgcgca
attcttgatcaagattggctcaaagaatataaccacggtattattttactttctggagcc
aaagagggcgacttgggtaaaatgttattaaagggccattttgaattggcgagtgagata
acgcaattttatcaaacttattttccacaacgttattatcttgaattgatacgcacaggg
cgtgttaaagaagagacgtatatacaccatgctctcgagtgggctgaaaaacatcaattg
ccggtggtggctaccaaccaagtcgttttttctaacaaaacattatttgatgcgcatgtt
atccgcgtgtgtatcaatcagggctatacattaggcgatgaacgtcgcccgcatgattac
agtgaagagcagtatttacgcagcccagaagagatgtgcgagctcttttcagatatccct
gaagcattgcaaaatagcgttgaaatagccaagcgttgtaacgtgacactacggttaggt
gagtgttttttacccgacttccctacgcaaggtaaacccattaatgattattttattgag
gtttctcgccaaggtttaaacgcccgtttagagtttttatttgataaaaacagtgctgat
tttgcgcagatacgcgcgccttatgatgagcgcttgagaattgaactcgaggtcattaac
tcgatgggatttccgggttatttcttgattgtaatggagtttattcagtggagtaaagac
aatggaataccggtcggtccaggacgtgggagtggtgcgggatcattggttgcatacgca
cttaatattaccgatttagatccattaaaactcgatttactgtttgagcgatttttgaat
ccagagcgtgtgtcgatgcccgattttgatatcgatttttgcatggaaagacgtgatgaa
gtgattgatcatgttgcgcaattatatggtcgtgatgcggtttcgcaaattattaccttt
gggactatggccgccaaagcggttattcgtgatgtgggccgagtactgggtcatccttat
ggttttgtcgatagtatttctaaactggttccgccgacgccaggcatgacgctgagcaaa
gcgtttgaggaagagcctcgcttgcaagagcgctacgatggcagtgaagaagtgcgcgac
ttgattgatatgtgtcgaacattggaaggcactattcgtaatgcgggtaaacatgccggt
ggcgtggttatttcacccacgaccattaccgattttgcacctttgtactgtgatgatgaa
ggtaagaatcccgttacgcaatttgataagaatgatgttgaaaccgcgggtctggttaaa
ttcgattttctaggtttgcgtaccctcactatcattcagtgggcattggatatggccaat
gcgcataaaagcgatcgcggtgaagaggcgattgaaatagagcgcataagcttaacggag
cctaaatgttttgagcttttaaaacgctatgaaaccacttcggtctttcagcttgaatca
cgcggtatgaaagatcttattaggcgtctacaaccggattcctttgaagatatgatagcc
ttagtggcgttatttaggcccggtccattaggctctggcatggtagataactttattgag
cgtaaacatggtcgtgaagcggtctcttaccccgatgaaaaatggcaacatgaatcactc
aaagaaatactagatcctacttacggtattattttgtatcaagagcaagtgatgcaaatt
gcgcagatattatcgggttataccttgggtggcgctgatatgttacgccgcgcgatgggt
aaaaagaaacctgaagagatggcgaaacaacggagcacctttgagcaaggtgcgattaat
aatggcatagatggcgaactcgccatgaaaatatttgatttagtagaaaagtttgcgggt
tatggttttaataaatcacactcggcggcctatgcgttagtgtcgtatcaaacgctgtgg
atgaaaacattttatcctgcctactttatggcagccgtactttctgcggatatggataat
accgacaaagtggttattttggtgtcagaatgtcagcgcatggggcttaatctgtgtcca
cctgatgtgaatgaaggccagtttaaatttaatgtcgataaaaacctgcgcattatttat
ggtattggggcggtgaaaggtgtgggtgaaggcccgattaatgccattatagaggcgcgc
acgattggtggggatttccgcgatctttttgatttttgtaatcgagtggatttaaagcat
tgtggtaaacgtattattgaaaaattaatattagccggtgcattagataatttaggccct
cacagggcagctttaatggaaaatttacccttagccttagcgtctgcaacgcagcataaa
agggctgaatcatttggtcagtgcgatttgtttggtgtgttaacgacggacagtgctgat
attgaaaatagattttctaaagttgaaaaatggcctgagaagcagtggcttgcgggtgaa
aaagaaaccttaggattatatttaaccgggcatccgatcaatcaatatgaagcgcatata
cgggcgtttcattgtaagcctattgttgatttaagcagtgaccgccgtggacaaaatagc
cgaatagcggggcttattattggcctgcgtgtgatggtgaccaaagcgggtaagcgtatg
gggattttaaccgtagacgatagaaccgcacgcatcgatatcaccatctttgctgatctt
cttgaccaatatgaagcgttattagtgatggataaagtcattgtattacaaggccaagtg
agtgaagacttctttaatggtggtcttaaaatgaacgcgagagaagtgatgagtattgat
caggcgcgcgagcgttttgcctctaaattgcgtttaaaaataaataaagaaaagatagca
gatgattttcaggtgcattttaacgaggcattgcaagtcgctaaaggtggtttgtgcccc
gtttatatacaatatacgcaggaaaaggcatgtgcggagttagcgttaggtttatcgtgg
tcggtgacaccgagtgatgatttactttttgcgttgcaaaaattactgggcgacgacaac
gtcagtttgcaatttgaacaaataacaagttag
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