Psychromonas sp. CNPT3: PCNPT3_12495
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Entry
PCNPT3_12495 CDS
T02515
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psy
Psychromonas sp. CNPT3
Pathway
psy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCNPT3_12495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psy03019
]
PCNPT3_12495
03400 DNA repair and recombination proteins [BR:
psy03400
]
PCNPT3_12495
Enzymes [BR:
psy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCNPT3_12495
Messenger RNA biogenesis [BR:
psy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCNPT3_12495
DNA repair and recombination proteins [BR:
psy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCNPT3_12495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
DNA_pol3_theta
Motif
Other DBs
NCBI-ProteinID:
AGH82435
LinkDB
All DBs
Position
complement(2961307..2963115)
Genome browser
AA seq
602 aa
AA seq
DB search
MNVPSLASAEQILFDCFGYKSFRAGQKEVIEQLCAGKDALVVMPTGGGKSLCFQIPALIQ
PGICIVISPLISLMKDQVDTLQTCGVAAAYLNSSLSYPQQNQILNDMHQGKLKLLYIAPE
RLLRHDFMQRLKTLTINLFAIDEAHCISQWGHDFRPEYALLGQLKIHFPQVPLVALTATA
DHATQKDILARLQFNDPLLSIHSFDRPNIEYLLIEKYRPLIQLFNYLAEHQHESGIIYCT
SRRRTEEIAQKLQGKGLNARCYHAGLELSERQLVQDKFIKDEVDIVVATVAFGMGIDKPN
VRFVVHYEIPKNIESYYQETGRAGRDGLPAQAMLFYDPADPARVRAMLEKNENEEQRRIE
LHKLNTMVAFAEAQTCRRQVLLNYFGEYSRNACGNCDICLDPPKRYDALEDARKVLSCVY
RSGQNFGMHHIVEVLRGAKTARIKSLGHDKLSVYALGAEQSTEYWLSLLRQLIHCGLLMQ
NLTRGSALQLTPAARPILRAELPLQLAVPRLQMVKSSKNKKRLSLASDNKLFARLRQLRK
QIADREDRAPYMIFSDVSLSEMSEIMPTNQSEFLNITGVGQIKLEKYGVEFLQIIKEYEA
SS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgtaccttcattagcaagcgctgagcaaatattatttgattgttttggctataag
agttttcgagctgggcaaaaagaagtcatagagcaactatgtgcgggtaaagatgcgtta
gtggtgatgccaacgggtggcggtaaaagtttatgctttcaaatacctgctttaattcag
cctgggatttgtattgtgatttcacctttaatttcactgatgaaagatcaagttgatacc
ttacaaacatgtggtgttgcggccgcttatttgaattcgagtctttcttaccctcagcaa
aatcaaatcctcaatgatatgcaccaaggtaagcttaagctcttgtatatagcaccagag
cgcttgttacgtcatgatttcatgcaacgcttaaaaacattaaccattaaccttttcgcg
atagatgaggcgcattgtatttcacaatgggggcatgactttcgccctgaatatgcatta
ctcggacaattaaaaatacattttccacaggtgccattagtagcgctgacagcaacggca
gatcacgccacacaaaaagatatccttgcacggttacaatttaacgatccccttttatct
attcacagttttgatagacccaatattgaatatctcttaatagaaaagtatcgacccttg
atccagctgtttaattatttagcggagcatcaacacgaaagtggcattatttattgtacg
agtcgccggcgcactgaagagatcgcgcaaaaattacagggaaaaggtttgaatgcacgt
tgctaccacgctgggcttgagcttagtgaacgacagttagtgcaagataaatttattaaa
gatgaagttgatattgtggtggcaacggtcgcttttggaatgggtattgataagcctaat
gtgcgttttgtggtgcattatgagatccctaaaaatatagaatcatattatcaagaaacg
ggccgtgcgggacgtgatggactgcccgctcaggcgatgcttttttatgatccagccgat
cctgcacgtgtacgtgcgatgcttgaaaaaaatgagaatgaagagcaacggcgtattgaa
ttacataaattaaatacaatggtcgcttttgctgaagcgcaaacgtgtcggcgccaagtt
ttactgaattattttggcgaatatagccgtaatgcgtgtggtaactgtgatatttgtctg
gatcctcctaagcgttatgatgcgctagaagatgcgcgtaaggttttatcttgtgtgtac
cgtagcgggcaaaattttggcatgcaccatattgtcgaagttttaagaggggcaaaaacc
gcccgcatcaaaagtttaggccatgataagttaagcgtttatgcgctgggggcagagcaa
agtacggagtattggttaagtttattaagacaattgatccattgtggcttattgatgcaa
aatttaacgaggggctctgcattgcaattaacgccagcagcgcgcccgatattacgtgcc
gagttacctttacagcttgcggtgccacgtttacaaatggttaaaagcagtaaaaataaa
aaacgtttaagtttggcttcggataataaattatttgcacgtttacgccaattacgcaaa
cagatagcagacagagaagatcgggcgccatatatgatctttagtgatgtttcactgtct
gaaatgagtgaaataatgccgaccaatcaaagtgaatttttaaatattacgggggttggt
cagataaaattagaaaaatatggtgtagagtttttacagataattaaagaatatgaggca
tcgtcataa
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