Psychrobacter sp. AntiMn-1: AOT82_1478
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Entry
AOT82_1478 CDS
T04964
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psya
Psychrobacter sp. AntiMn-1
Pathway
psya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT82_1478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psya03019
]
AOT82_1478
03009 Ribosome biogenesis [BR:
psya03009
]
AOT82_1478
Enzymes [BR:
psya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AOT82_1478
Messenger RNA biogenesis [BR:
psya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOT82_1478
Ribosome biogenesis [BR:
psya03009
]
Prokaryotic type
rRNA processing factors
AOT82_1478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOY43857
UniProt:
A0A1D9CZ68
LinkDB
All DBs
Position
1659909..1664111
Genome browser
AA seq
1400 aa
AA seq
DB search
MKRILINATQNEEIRVALCTGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GSQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLA
GRYLVLMPNNPRGGGISRQISGKLREDMKRMLSNLDLPKGMSVIIRTAGIGKTQEDLQHD
LNHLLNIWQAIQEQNQKYPSPRLVHQEAGVVTRAVRDYLRDDIAEIWIDNENAYIEAAGF
IDAVMPKQAEKLRKYTDYEPMFSRFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDI
NSAKSTKGSDVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLI
DATKYDRARVQFGDISKFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIM
RQIEQIALKERQGEVQAEVPTDIAAFLLNEKRDSLVYLEQDSGTRITILPHAHLESPNFK
LHFNRDGFAPSSYERITDTQQQEHSDLGYNVDWQTAEKERPEQQPTRQPRKPSNDNNKQS
TATQSQNDTVNHSNDRRNHKNANDAAPARAPQASQPKNVVAPVAAQAQNVEATAQPKAVA
WLSNLFAQAPQATTTPSVSSRDAAEAIEALVNTGAQSLGSFGQVDSNALNSGASNSEQPT
QQNNHQKNDNQPSDSNANRQQTRRTNDSDTDDSNNEDRRRRKPRKSRNSKPRQRKEATDE
TTDHTNSGADEKSSDTQGQQQQDKRQQENRRTNDRNRNNRQDNSNRQDNNQKANDRNDAD
NVTGQKADEQVRAKRKSHSQRGSRGKLERGETLTADDVKQNKQQNGKNSDDANGKNQSGT
RRSQDPNEVVLQVNEAPTKLKASEVVHLSLDDSKSTPAKPQSSDKQRSTNGTAKNESTKD
HATQQAANKPSNSEKNTDQKGDNKKGTVETSENQTQNNQEATTNAKVQNNAPDRKQSTDN
KNQSEQAQPTSSSDQPASAGDVDSQSVSTKTADAEQAKTKPEHQKAETTDTGTTDNVSKA
EEAKKVPANDSGANDKGMSNSALELTHESLFGERYVTAEKFGQASNDPRVVRAQQAKATP
QVEATTVSVAAIRGTVGEFIRATLPDAQTRLAENGVISCFIETIALYNEQAQSADNSTNV
ENAVDDNHSNNMASQRFDFSNYGYQPLAADYLARFAAMTQAVSQFAVAQGKTAVEPRAIG
KRASNDPRGQHPDYQEPAVLSVPTKQTSSNEASLVNTKQNNSEVDAHNVEATALANQAQA
DHVSTDSEKLLEVEQAQSAANRVEAQASEAQGVNTTEADATQADVEKSDAEEAEQTTESK
VEESAKETSKDDSQAAKSKTTIASYKNMIENVAEQLLPQTGMFNLTTPKVPKARSRKPKT
DHKKPTQAEKLASDDTDSES
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcattttgatcaacgcaactcaaaacgaagagattcgtgtcgccttatgtaca
ggcaatcatctatacgatttcgacctagaaaatcgtacccgcgagcaaaaaaaatctaac
atttataaaggccatgtaacccgtgttgagccatcgcttgaagcggtatttgtcgagtac
ggctctcagcgccaaggatttttgccgattcgtgaaatctctgccgaatacctaagcggt
aacccacgtgatgaaaacatcaaaaaactgattaaagaaggcgacgagctaatcgtccaa
gtcgaaaaagaagagcgcggtaacaaaggcgctgccctatcgacgtatgtctctttggct
ggtcgctatctggtactcatgccaaataaccctcgtggcggcggtatctcacgtcaaatc
tcaggcaagctgcgcgaagacatgaaacgtatgctgagcaatcttgatttgccaaaaggc
atgagtgttatcattcgtaccgcgggtatcggcaagacgcaagaagacttgcaacatgac
cttaaccatttgcttaatatctggcaggccatccaagaacaaaaccaaaaatatccgtca
ccgcgccttgtccatcaagaagcaggtgtcgttacccgtgctgtccgtgactatttgcgt
gatgatatcgctgagatttggattgataacgaaaacgcttatattgaagcagcaggcttt
attgatgcagtgatgccaaaacaagccgaaaagctacgcaaatataccgattatgaacca
atgttttcgcgctttaatatcgaaaaacaaatcgaaacggcctatcagcgtgaggtacgt
ctaccatcaggtggctcaatcgtcatcgaccaaacagaagccttggtctctatcgacatc
aactcagctaagtcgactaaaggttcagacgttgctgagactgcttatcataccaaccta
gaagcggccgacgagattgcccgtcagctgcgtttgcgtgatatgggtggtttgatcgtt
attgactttattgacatgaatgacaataagcatcaaaaagaagtcgaaaagcgtctaatt
gatgcgaccaaatacgatcgtgctcgcgtccagtttggtgatatctctaaatttggtctg
atggaaatgagccgtcagcgtctacgtccatcattagaagaatcaactggttatatctgc
ccacgttgccatggtaacggtatgattcgtgacctgcgttcattgtcgctctctatcatg
cgtcaaattgaacaaattgcgctcaaagaacgccaaggtgaagtacaagcggaagttcca
accgacatcgcagcatttttgctaaatgaaaagcgtgacagcttggtttatcttgagcaa
gatagtggcactcgtatcacgattttgccgcacgcccatttagagtcaccaaactttaag
ctgcactttaaccgcgacggatttgccccatcgagctacgagcgtatcactgatacccag
caacaagagcacagtgaccttggctacaatgtcgactggcaaacggctgaaaaagagcgc
cctgagcagcagcctactcgccagcctcgtaaaccgtcaaatgataacaacaagcagagc
acagccacgcaatcgcagaacgataccgtcaatcatagcaatgatcgccgtaatcataaa
aatgctaatgacgctgcgccagcgcgcgcaccacaagccagtcaacctaaaaacgttgta
gcgccagtcgcagcgcaagctcaaaatgtggaagccactgctcaaccaaaagcagtcgct
tggttatcaaatctgtttgcgcaagcaccgcaagccaccaccacacctagtgtcagtagt
cgcgatgccgctgaagcgatcgaggccttggtaaatactggcgcacaaagcttaggctca
tttggccaagttgatagcaatgcattgaatagtggcgcttcaaatagtgagcagccaact
caacaaaacaatcatcagaaaaacgacaaccaaccatcagatagcaacgctaatcgtcaa
cagacacgccgtactaacgacagcgatactgatgacagcaataacgaagacagaagaaga
cgtaagccgcgtaagtcaagaaactcaaagccgcgtcaaagaaaagaagcgactgacgag
acgactgaccataccaatagcggtgctgatgagaaatcgtctgacacgcaaggccaacaa
cagcaagacaagcgtcaacaggaaaacagacgtacgaacgatcgcaatcgtaataaccgt
caagacaacagcaatcgtcaagacaataaccaaaaagcaaacgatcgtaatgacgcagac
aacgtaactggccaaaaagctgatgagcaagtgcgcgctaagcgtaaatcgcatagccaa
cgtggctcacgcggaaagctagagcgcggtgagacgctaacggctgacgatgttaagcaa
aacaagcagcaaaatggtaaaaatagcgacgatgccaatggtaaaaaccaatctggcaca
cgtcgtagtcaggaccctaatgaagtcgtgctacaagtcaatgaagcaccgaccaagcta
aaggcgtcagaagttgtacacttatctttagatgatagcaagtccacgcctgctaagcct
caatctagcgataaacaacgctcaacaaacggcacggcaaagaacgagagcacaaaagat
cacgctactcagcaagctgccaacaagcctagtaacagtgagaaaaatactgaccaaaaa
ggtgacaataaaaagggtacggtagagacgtctgagaatcagactcaaaacaaccaagag
gcgactactaacgctaaggtgcaaaacaatgcacctgatcgtaagcagagcactgataat
aaaaatcagtcagaacaagcgcaaccaacctcttctagcgaccaaccagcctctgctggc
gacgtagacagtcagtcagttagtacaaaaacggctgatgcagaacaggccaaaaccaag
cccgagcatcagaaagctgagaccactgatactggtaccactgataatgtcagtaaagct
gaagaagctaaaaaagttccagctaatgacagtggtgccaatgataaaggcatgagtaac
tcagcacttgagttaacacacgaatcactgtttggtgaacgttacgtgactgctgagaag
tttggtcaagctagcaacgacccacgtgtggtacgtgctcagcaagcaaaagcaacacct
caggtcgaagctactactgtaagtgtagcagcgatacgtggcaccgttggtgagtttatt
cgtgcgacgctgccagacgcgcaaactcgcttagcagaaaatggcgttatcagctgcttt
atcgagacaattgccttgtataacgagcaagcgcaatctgcagataatagcaccaacgtt
gagaatgctgtcgatgacaaccatagcaacaatatggccagtcagcgctttgactttagc
aactatggctaccagccattagcagccgattacttggcacgcttcgcagcgatgactcaa
gcagtcagtcaatttgcagtagctcaaggcaaaaccgccgttgaaccacgtgccattggc
aagcgtgccagcaatgatccacgcggtcagcatcctgactaccaagagccagctgtgttg
agtgttcctacaaagcagacttcgagcaatgaagcatcgctagtaaatactaagcaaaac
aatagcgaagtggatgcacataacgttgaagcgacagcactggccaatcaagctcaggct
gaccatgtcagcactgatagtgagaaattgctagaagtcgagcaagcgcaatcagctgct
aaccgtgtagaagctcaagccagtgaagcacaaggagtcaatacgacggaagctgatgca
acacaggcagatgtagaaaagtctgatgcagaagaggctgagcaaacaaccgaatctaaa
gtagaagaatctgctaaagagacgagcaaagatgacagtcaagcagctaaatctaagacc
accatcgccagctataaaaacatgatcgagaatgtggctgagcaattgctgccacagacc
ggcatgtttaacctgacgacgccgaaggttccaaaggcacgcagtcgcaagcccaaaacg
gatcataaaaaaccgacccaagctgagaagcttgcgtctgatgataccgatagcgaaagc
taa
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