Psychrobacter sp. AntiMn-1: AOT82_801
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Entry
AOT82_801 CDS
T04964
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psya
Psychrobacter sp. AntiMn-1
Brite
KEGG Orthology (KO) [BR:
psya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psya03016
]
AOT82_801
Enzymes [BR:
psya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AOT82_801
Transfer RNA biogenesis [BR:
psya03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AOT82_801
Prokaryotic type
tRNA splicing ligases
AOT82_801
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AOY43180
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All DBs
Position
920239..921471
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AA seq
410 aa
AA seq
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MQPINHNIIQDGGTPIRLWTKGVPVDPKAHDQLIKASQMPFIYKWLAVMPDVHVGIGATI
GTVLPTKEAIIPAAVGVDIGCGMMAVQTTLSADDLPDNLHGLRTELEKAIPHGRSKTRGR
GSRRDVGAWANPDDTVMNGWGTLVDDFNYLTQKHPKLKNTNNLKHLGTLGTGNHFVEVCL
DETNQVWIMLHSGSRGVGNAIGRYFIELAREDMRKWFINLPDKDLAYFAEGTEHFDDYWF
AVGWAQRFAFKNREIMMEKAIQALRTIVPKPFDAAVKAVNCHHNYVAKEEHYGEEVFVTR
KGAVRARVGEYGIIPGSMGAKSFIVKGKGNEESFCSCSHGAGRVMSRTEAKKVFTIDDQI
AQTKGVECRKDANVIDEIPAAYKNIEDVMSAQSDLVEVVHTLRQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctatcaatcacaatatcattcaagacggtggcacccctatccgcctatggacc
aaaggcgtgcctgtcgacccaaaagcccacgaccagctgattaaagcctcacagatgccc
tttatttataagtggctcgcggtgatgcctgatgtccatgtcggtatcggtgcgaccatc
ggtacggtgctgccgaccaaagaagcgattatcccagcagcggtcggcgtggatatcggc
tgcggcatgatggcggtgcagaccacgctgtccgcagatgatttgcccgacaacctgcac
ggtctgcgcaccgagctggaaaaagccattccgcatggacgcagcaagacacgcggtcgc
ggctcgcgccgtgacgtgggcgcgtgggcgaaccctgatgataccgtgatgaatggctgg
ggtacgctggtcgatgattttaattatctgacccaaaagcatcccaaactaaaaaacacc
aacaatctaaagcatttgggcactctgggtacaggcaatcactttgttgaggtgtgcctt
gatgagaccaatcaggtgtggattatgctgcattcaggctcacgcggcgtgggcaatgcc
atcgggcgctactttattgagctggcgcgtgaggacatgcgcaaatggtttattaacctg
cctgataaagatttggcgtattttgctgaggggactgaacattttgacgattattggttt
gcggttggctgggcgcagcgctttgcctttaaaaaccgcgaaatcatgatggaaaaagcc
atccaagcgctacgcaccatcgtgccaaaaccgttcgatgctgcggtaaaagcggtcaac
tgtcaccacaactatgtggcaaaagaagagcactacggcgaggaagtctttgtcacgcgt
aaaggcgcagtgcgcgcacgcgtcggcgaatacggcatcatcccagggtcgatgggcgca
aaatcctttatcgtcaaaggtaaaggcaacgaagaatcgttttgctcttgctcgcatggc
gcaggtcgcgtgatgtcacgcactgaggcgaaaaaagtctttactattgatgaccaaatc
gcccaaaccaaaggcgtagaatgtcgtaaagacgcaaacgtgattgacgaaatcccagcg
gcgtacaaaaatattgaagacgtgatgagcgcacaaagtgacttggtggaagtggtacat
accttgcggcaagtggtttgtgtgaagggttaa
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