Psychrobacillus sp. INOP01: KD050_02220
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Entry
KD050_02220 CDS
T09653
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KD050_02220 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyb03021
]
KD050_02220 (rpoD)
Transcription machinery [BR:
psyb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KD050_02220 (rpoD)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QUG42135
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Position
complement(427137..428261)
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AA seq
374 aa
AA seq
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MADKSERTKESEIELSLDEAKKQLIELGKKNGELTYHDIAEKLAHFELESDQIEEFIDNL
EGRNIELSRKDGDEEDLDRLMKGKEETFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLKA
SEEVALAERIEQGDEEARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK
FDHRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREP
SPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDADAQSPSDHAAYE
LLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagtccgaacgtacaaaagaatcagaaattgaattatcattagacgaggca
aaaaaacaattaatcgaattaggtaaaaaaaatggtgagctgacgtatcatgatattgcg
gaaaaattagcccatttcgaacttgaatctgatcaaatcgaagagttcattgacaatctt
gaaggtagaaatattgaacttagccgtaaagatggtgatgaggaagatttagatcgttta
atgaaagggaaagaagagacctttgatttaaatgatctaagtgtcccacccggcgttaag
atcaatgaccccgttcgtatgtacttgaaggaaatagggcgagtagacctattaaaagct
tctgaagaggttgctcttgctgagcgtattgaacaaggggatgaagaagctagaaaacgt
ctagcggaagcaaaccttcgattagttgtaagtattgcaaaacgttatgtagggcgcgga
atgctatttttagaccttatccaagaaggtaacatggggctcatcaaagctgtagagaaa
tttgatcatcgtaaaggattcaaattcagtacttatgcaacatggtggattcgtcaagca
atcacacgtgcaattgcagaccaagctagaacaatccgtattcctgtgcatatggtagaa
acaataaataaattaattcgagttcaacgccaattattacaagatttaggtcgtgaacct
tctccggaagaaattggggaagaaatggacttgccagcagaaaaagttcgtgaaatatta
aaaattgctcaagaacctgtttctttagaaactcctattggagaagaggatgattctcat
ttaggtgattttatagaagatgcagatgcacagtctccttctgatcacgctgcctacgag
cttctcaaagagcaattggaagatgttttagatacactaacagacagagaagaaaacgtg
ttgcgcttgcgtttcggtctggatgatggtcgtacgagaacccttgaagaggttggaaaa
gtatttggagttacgcgtgagcgtattcgtcaaatcgaggcaaaagcactacgaaaactg
cgtcacccttctagaagtaaacgtctgaaagactttttagaatag
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