Psychrobacillus sp. INOP01: KD050_09980
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Entry
KD050_09980 CDS
T09653
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KD050_09980 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyb03021
]
KD050_09980 (rpoB)
03400 DNA repair and recombination proteins [BR:
psyb03400
]
KD050_09980 (rpoB)
Enzymes [BR:
psyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KD050_09980 (rpoB)
Transcription machinery [BR:
psyb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KD050_09980 (rpoB)
DNA repair and recombination proteins [BR:
psyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KD050_09980 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QUG43515
LinkDB
All DBs
Position
complement(1963247..1966801)
Genome browser
AA seq
1184 aa
AA seq
DB search
MTGQLVQYGQHRQRRSFARISEVLELPNLIEIQTASYEWFLEEGLREMFKDISPIEDFTG
NLSLEFVDYSLNEPKYSVDESKERDATYAAPLRVKVRLHNKETDEVKEQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFHDKTDKNGKKGFGSTVIPNRGAWLEYEIDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYLRNTLEKDNTETSEKALLEIYERL
RPGEPPTVESAKSLLYSRFFDPKRYDLANVGRYKMNKKLHIKNRLFNQTIAETLVDPETG
EILVEAGTLIDRRVLDRLIPHLENGIGFKTLSQVGGVLEDDITIQSIKIYAPNDEEQKEV
NVISNAYVETEVKNITPADIVSSIGYFFNLLFNVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTQSIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFG
FIETPYRRVDPETGLVTSRIDYLTADEEDNYVVAQANSPLSDEGEFLKEEVVGRFRGDNT
VFRKEQIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFVGTG
MEHVNARDSGAAVIAKYHGIVEHVEAKEIRVRRIEEVDGKEVKGDLTSYKVHKFERSNHG
TSINQRPIVKIGDRVKPLDILADGPSMEQGELALGRNVLVAFMTWDGYNYEDAVIMSERL
VKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVRDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDEL
SPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMASRLLGVHMASPVFDGANEEDVWNTMEEAGLNRDGKTILYDGR
SGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMD
VKMLTIDEEEIELRDLDEDDDIPAADALGILPIATEEEPVGTVE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcaatacggacaacaccgccaacgcagaagttttgcgcgtatt
agtgaggtgctggaactaccgaatctaatcgaaattcagacggcatcttatgaatggttc
cttgaagaaggtttacgtgaaatgttcaaggatatttcaccaatcgaggactttacaggc
aatctatcacttgaatttgtcgactatagtttaaacgaaccgaaatattcggtcgacgaa
tcgaaagaacgtgacgcaacatacgcagcaccactgcgcgtaaaagtacgtctccacaac
aaagaaacggacgaagtaaaggaacaagatgtcttcatgggtgatttcccattaatgact
gaaactggaactttcgttattaacggagctgagcgcgtaatcgtatctcagttagtccgc
tcaccaagtgtttacttccatgataaaacagacaaaaatggtaaaaaaggctttggatca
acagtaattccgaaccgtggtgcttggttagaatatgaaatcgatgcaaaagacgtggtt
tacgttcgtatagatcgtacacgtaaattaccagttactgttttacttcgcgcattaggc
tttggatcagatcaagaaattatcgatttaatcggtgacaatgaatatttacgtaacacg
ctagaaaaagataatacagaaacatctgaaaaggcgttgctggaaatctatgagcgttta
cgtcccggtgaaccaccaacagtggaaagtgcaaagagcctgctatactctcgcttcttt
gacccaaaacgctatgatttagcgaatgttggtcgttacaaaatgaacaaaaaattgcat
attaaaaatcgcttgtttaaccaaacaatagccgaaacgctagtggatccggaaacagga
gagattttagtagaagctggtacgttaattgatcgtcgtgtactagatcgtctaattcct
catcttgaaaacggcatcggcttcaaaacattatctcaagtaggtggtgttttagaggac
gacattacaatccaatcgattaaaatttatgctccaaatgatgaagaacaaaaagaagtt
aatgttataagtaatgcgtatgtggaaacagaggtaaaaaacattacgccagctgatatc
gtttcatctatcggttacttctttaaccttttgttcaacgttggaaacacggatgatatc
gatcatctaggtaaccgtcgtttacgctctgttggtgagttactacaaaaccagttccgt
attggtctttcacgtatggaacgtgtggtacgtgagcgaatgtctattaacgatacacaa
tcaatcgttccacaacaattgatcaatatacgtccagttattgcatctatcaaagaattc
tttggtagctcgcaattatctcagttcatggatcaaacgaacccacttgctgagttgaca
cacaaacgccgtctatcggcgcttgggcccggtggtttaacacgtgagcgtgcaggattc
gaagtacgtgacgttcactactctcactatggtcgtatgtgtccgattgaaacacctgag
ggaccgaacatcggacttattaactcgctttcaagttttgcgaaagtaaataagtttgga
tttattgaaacaccatatcgccgtgttgacccggagacggggctagttacatcacgtatc
gactatttaactgcagatgaagaggataactatgtggtagcacaagcgaactctccatta
tctgatgaaggtgaattccttaaagaagaagtagtaggtcgtttccgtggagataacacc
gtgtttagaaaagaacaaattgattacatggacgtttcgccgaaacaagtcgtttctgca
gcaacagcatgtattccgttcttggaaaacgatgactccaaccgtgcgcttatgggagca
aacatgcaacgtcaagctgttccactattaaacccagaagctccattcgttggaactggt
atggaacatgtgaacgctcgtgactcaggtgctgcggttattgcgaaataccacggaatt
gttgagcatgttgaagcaaaagaaattcgtgttagacgtattgaagaagtggatggaaaa
gaagttaaaggtgacttaacatcttataaagttcataaatttgagcgttcaaaccatggt
acatctataaatcaacgtccaattgtaaaaattggtgatcgtgttaaacctctggatatt
cttgcagatggtccttctatggaacaaggagagcttgctttaggacgtaatgtactagta
gctttcatgacatgggacggatacaactatgaagatgccgttattatgagtgaacgtcta
gtgaaagatgatgtatatacttccgtgcatattgaagaatatgaatcagaatcacgtgat
acaaaacttgggccagaggaaattacgagagatattccaaatgtcggtgaagacgcattg
cgcaacttggacgaccgtggaattatccgtattggtgcagaagttcgtgatggagatatt
cttgttgggaaagtaacgcctaaaggagttacagaactaacagctgaagaacgtttacta
cacgcaatcttcggtgaaaaggctcgtgaagttcgtgatacttctctacgtgtacctcat
ggtgcaggcgggattgtattagacgtaaaagtatttaatcgcgaagatggcgatgagtta
tctccaggtgttaaccaattagttcgtgcttatatcgttcaaaaacgtaaaatctctgtt
ggagataaaatggccggacgtcatggtaataaaggggttatctcgcgtattcttccagaa
gaagatatgccattccttccagacggcacaccagttgatatcatgttaaatccacttggg
gtaccttctcgtatgaatatcgggcaagttttagagcttcacttaggtatggcttcaaga
cttcttggcgttcatatggcgtcgccagtatttgatggtgctaacgaagaagacgtttgg
aacacaatggaagaagcaggacttaaccgtgacggtaaaactatcctttatgatggacgt
tcaggtgaaccatttgataaccgcgtatctgtaggggttatgtatatgatcaaacttgcc
cacatggtagatgataagttacatgctcgctcaacaggaccttattcacttgttacgcaa
cagcctcttggagggaaagcgcaatttggtggacagcgttttggagagatggaagtatgg
gcactagaagcttatggtgctgcttacacgttacaagaaatcttaacagtaaaatccgat
gacgttgttggacgtgtgaaaacatacgaagcaattgttaaaggtgaaagtgtaccagaa
ccaggagttcctgagtcattcaaagtattgatcaaagaactacaaagtttaggtatggat
gttaagatgcttacgatcgatgaagaagaaatcgagcttcgtgatttagatgaagatgat
gatattccggcagctgatgcacttggtattttgccaatcgcaactgaggaagagccggtt
ggaacagtagaataa
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