Psychrobacillus sp. INOP01: KD050_11170
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Entry
KD050_11170 CDS
T09653
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KD050_11170 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyb03400
]
KD050_11170 (mfd)
Enzymes [BR:
psyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KD050_11170 (mfd)
DNA repair and recombination proteins [BR:
psyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KD050_11170 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUG39905
LinkDB
All DBs
Position
2201947..2205480
Genome browser
AA seq
1177 aa
AA seq
DB search
MEPLSNLLLEDTQIQKLVKELESGSDQQLITGLTSSARAVFTNMLYKTRQRAILIVTPNL
LHAQKLTEDLVKLIGEDLVRLYPADELIAADISITSPELRAQRLEALDHMLTHDNGVYIV
PIAGLKKHMPTKKDWQASSISITEGEEVSLDSFLQRLVNMGYVRQPMVTAPGEFALRGGI
IDIYPLYLENPIRIELFDTEVDSIRTFSAEDQRSLEKRKDIRILPATEYVLTEEKKLLLA
HKLEEALAESLEKVKIPEVKDLFYQNIQQDIELLKQGEQPKEYMKYVSLLEENNSFLGNY
FNENGMVLFDELGRIQEVTETLEREENDWILSLLEEGKTVHRVKPSFSLKEIIQMFSNEK
LYFSLFSRTFSGITIKKNISFSCKPMQNFHGQMHLLKNEIERFTQGKFRLFILADGKDRI
QKIHAVLEDYEITSQIGASASDMKSPGIFIVEGDLEAGFELPLQRIAVITDSELFKQRHK
KKARAQKVTNAERIKSYSEIKPGDNVVHIHHGIGKYIGIETLHVNGIHKDYLHIRYRGED
KLFVPVDQIDLIQKYVASGEKDPKLHKLGGADWKKTKTKVSAAVQDIADELIKLYAKREA
EVGYAFEPDSEMQQSFEAAFPYEETDDQLRTIQEVKKDMEKARPMDRLVCGDVGYGKTEV
AIRAAFKAVMEGKQVAFLCPTTILAQQHYETMIERFQDFPIEVGLLSRFRNKKQQSETIN
GLKKGLVDVVVGTHRILSKDVEYHDLGLLVVDEEQRFGVKHKERIKQLKTNVDVMTLTAT
PIPRTLHMSMIGVRDLSVIETPPKNRFPVQTYVMEHNGALVREAIERELARGGQAFYLYN
RVEDITRKVDEIQMLVPTARVGFAHGQMSETELESIIISFIEGEYDVLVTTTIIETGIDI
PNVNTLIIQDADKMGLSQLYQLRGRVGRSNRVAYAYLMHQRDKVLTDVAEKRLQAVKEFT
ELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYTQMLEDAIAEKRTGIKKEDLPD
IEIALSTDAYISDEYIPDGYQKIQMYKRVKGMEKEEEYLDLIDELQDRFGDIPLEAEKLL
RIARMKIWGIEVGVQSIKEINKIVSISLSTEGTKAINGAKLVEESMKYGRAVGFNMDNGS
LVLTIDERKTGKFNPFDVLEEMMRLLPESKKEIEEVK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggaacctttaagtaatttattgctcgaagatacacaaatacaaaagctagtaaaagag
ttggagagtggtagtgaccaacagctaataaccggccttacttctagtgcaagagctgta
tttaccaacatgctatataaaacacgacagcgagctatactgattgtaacgcctaaccta
ctacatgctcaaaaactgaccgaggatttagtaaaactaattggtgaggaccttgtccgt
ctatatcccgctgatgagctaattgcagctgatatatctattactagtccagaacttcgc
gcacaaagactagaagcattagatcacatgttaacgcatgataatggtgtttatattgtt
ccaattgcaggtcttaaaaaacatatgccgactaaaaaggactggcaagctagcagcatt
tctattacggaaggtgaagaagttagcttagattcttttttacaaagactagtgaatatg
ggatatgtacgccagccaatggttactgcccctggagaattcgctttgcgaggcggaatt
atcgatatctatccactatatctagaaaaccctattcgtatagaactatttgatacagaa
gtggactctattcgtacattttctgcagaagatcagcgttcgttagaaaaacggaaagat
atacgaattctaccggcaaccgaatacgtgctaactgaagaaaagaaacttctattagct
cataaattggaagaagcattagcggagagtttagaaaaagttaaaattccggaagtgaag
gatcttttctatcaaaatattcaacaagatatcgagcttttaaagcaaggcgagcaacca
aaagaatatatgaagtatgtctctttattggaagagaataatagttttttaggaaactat
tttaacgaaaatggaatggttttatttgacgagcttggaagaattcaagaagtgacagaa
actttggaaagagaagaaaatgattggatcctttctttgttagaagaaggaaaaactgta
catcgtgtaaaaccttcttttagtctgaaagaaattattcagatgttttccaatgaaaag
ctgtatttttcgttgttttctcgtactttttctggaattacgattaaaaagaatattagt
ttttcttgtaaaccgatgcaaaacttccatggccaaatgcatttattgaaaaatgaaata
gaacgatttacccaaggaaagtttcgcttatttatacttgcagatggcaaagaccgtatc
caaaaaatacatgcagtattagaagattacgagattacttcgcaaattggtgcttctgct
agtgatatgaaatcacctggtatttttatcgtggagggtgatttagaagctggttttgaa
cttccattacaacgaatagctgttattaccgattccgagctgtttaaacaaaggcataag
aaaaaagcgagagcccagaaggtaacgaatgctgagcgtattaaaagttactccgagatt
aaacctggagataatgttgtacatatacaccatggtattgggaaatatattggaattgaa
acgttgcatgttaatggaattcataaagactatcttcatattcggtatcgtggcgaggat
aaattatttgttcccgtcgatcaaatagatctcattcaaaaatatgttgcgtctggtgaa
aaagatccaaagctacacaaactgggcggagcagattggaagaagaccaaaacaaaggtt
tcagcagcagttcaagatattgctgatgagttaataaagttatacgcaaaaagagaagcg
gaagtcggatatgcgtttgaaccagatagtgaaatgcagcagtcctttgaagcggcattt
ccatatgaggaaacggatgatcagctccggactattcaagaagtgaaaaaagatatggaa
aaggctagacctatggatcgtcttgtatgtggagacgtaggttacggtaaaaccgaagta
gcaatacgtgcagcatttaaagctgtcatggaaggaaagcaagtggcctttctctgtccg
acaactatattggcacagcaacattatgaaacaatgatagagcgctttcaagattttccg
attgaagtaggcctactaagccgttttcgtaacaaaaaacaacaaagtgaaacgattaat
gggttgaaaaaaggattagttgatgtagtagtaggtacacatcgaattctatccaaagat
gtggagtaccatgatttaggtcttctcgttgtggatgaggaacaacgatttggtgtaaaa
cataaagaacggatcaagcagctaaagacaaatgtagatgtcatgactttaacagctaca
cctatccctcgtacattgcatatgtcgatgattggagtacgtgacttatctgtcattgaa
acccctcctaaaaaccgttttccagtacaaacctatgtgatggaacataatggtgcactt
gtccgtgaagcaattgaaagagaactagcacgtggaggacaggcattttatctatacaat
cgggtggaagacattacgagaaaagtggatgaaatacaaatgttagttccgactgctaga
gtggggtttgcgcatggtcaaatgagtgaaacggagttagagtccattattatcagcttt
atagaaggagaatacgatgttttagtgactacgactattatcgaaacaggtatcgatatt
ccaaatgtaaacacacttataattcaagatgcagataaaatgggactatcacaattatat
caattacgaggtcgtgtaggacgttccaatcgtgttgcttatgcttatttaatgcatcaa
agagacaaggtgttgacagatgttgcagaaaaaagattgcaggccgttaaagaatttaca
gagcttggctctggatttaagatcgccatgcgagacttgtctatacgaggtgccggaaac
ttattgggctcccaacaacatggatttatagactcagttggatttgatctttatacgcaa
atgctggaagacgcaattgcagaaaaacgtactggtattaaaaaagaggatttaccagac
atagaaattgcactctctacggatgcttatatttctgacgaatatattccagatggatat
caaaagattcaaatgtataaacgtgtcaaaggaatggaaaaagaagaggagtacttagac
ctcatagatgaattacaagaccggttcggagatattcctctcgaagcagaaaaattactt
cgtattgcacgtatgaaaatttggggtatagaggtaggtgttcagtctattaaggaaata
aataaaattgtttcgatttctttaagtactgaaggaactaaggctattaatggggcaaaa
cttgtagaggaatctatgaaatacggacgtgcggttggttttaatatggacaatggcagt
cttgtactgacaattgatgaacgtaaaacaggaaagttcaatccatttgatgtattagaa
gaaatgatgagactgttacccgaatctaaaaaagaaatagaagaggttaaatag
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