Psychrobacillus sp. INOP01: KD050_13540
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Entry
KD050_13540 CDS
T09653
Name
(GenBank) 3'-5' exoribonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03030
DNA replication
psyb03430
Mismatch repair
psyb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KD050_13540
03430 Mismatch repair
KD050_13540
03440 Homologous recombination
KD050_13540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyb03032
]
KD050_13540
03400 DNA repair and recombination proteins [BR:
psyb03400
]
KD050_13540
Enzymes [BR:
psyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KD050_13540
DNA replication proteins [BR:
psyb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KD050_13540
DNA repair and recombination proteins [BR:
psyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KD050_13540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
Rv2179c-like
DNA_pol_A_exo1
PTCB-BRCT
Cut12
Motif
Other DBs
NCBI-ProteinID:
QUG40317
LinkDB
All DBs
Position
2693246..2694166
Genome browser
AA seq
306 aa
AA seq
DB search
MDFVAIDFETANNLRSSVCSVGIVQVKNGKIYREIQSLINPLSEFHYYNTKIHGITEYMV
HSAPTFEEFWPNVKNLIEGQVVIAHNASFDMGVLQESLRQFHEPSPSFEYGCSYRIAKKV
WPQLYNHKLSTVASYLGIALRHHDALEDARAAAIITIEAMQKTQTNTVQQLAKLHNVKIS
SSIQTKKQSPSKRSSKSDVTIEFLEPESTALNSKHPFYRAQIVFTGRMLSMTRSKAAQLA
VNCGAICKGTVDHQTNYLVVGDNDLAKYLQGIKSTKMQKVEVMIQQGLPIEIVGEQDFLR
LVRYPM
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggactttgtagctatcgattttgaaacagctaataacctacgttcgagtgtttgctcg
gtaggaattgtgcaagttaagaacgggaaaatatatcgagaaatacaatccttaataaat
cctttaagtgaatttcattattataatacaaaaattcatgggattaccgaatatatggtc
catagtgcaccaacctttgaagaattttggccaaatgtgaaaaatcttattgaaggtcaa
gttgtcattgcacataatgcaagttttgacatgggggttttacaggaatcattacgtcaa
tttcatgaaccctctccgagctttgaatatgggtgctcttatcgaattgctaaaaaggtt
tggcctcagctatacaatcataagctctccactgtagcaagttatttgggtatagcctta
aggcaccatgatgccctagaggatgctcgcgccgccgctatcattacaatagaagcgatg
cagaaaacccaaacaaatacagttcaacaattggcaaaactacataatgtgaaaataagc
tcatcgattcaaactaagaaacaatccccatccaagcgaagtagcaaatcagacgtgact
atagaatttttggaacctgaaagtacagcgctaaattctaagcatccattttatagagca
caaattgttttcacgggaagaatgctttctatgacaaggtcgaaagcagcacaacttgca
gtgaattgtggagcaatttgcaaagggacggtggaccatcaaacaaattacttagtcgtg
ggagataatgacttagccaaatatctacagggcataaaaagtactaaaatgcaaaaggtg
gaagtcatgattcaacaagggcttccaattgaaatagttggagagcaagactttttaagg
ttagttcgatatccgatgtag
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