Psychrobacillus sp. INOP01: KD050_16815
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Entry
KD050_16815 CDS
T09653
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KD050_16815 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyb03019
]
KD050_16815 (rnjA)
Messenger RNA biogenesis [BR:
psyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KD050_16815 (rnjA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
DUF5548
Motif
Other DBs
NCBI-ProteinID:
QUG40936
LinkDB
All DBs
Position
complement(3445764..3447431)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VKNVDKIKGLFITHGHEDHIGGIPYLLKQINVPVYGGKLALGLLRNKLEEHGLLRQTKMI
VIQEEDVIKFRKTSVSFYRTTHSIPDAFGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNAEIPNFTMSERKVGESMDSIFRKVDGRIIFATFASNIHRLQQ
VTDAAVLHGRKIAVFGRSMDNAMTIGRELGYITAPKETFVDASALNRLPANEVLILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNRASVNRTINLLFRAGAEVIHGSL
NNIHTSGHGSQEENKLMLRLMKPKFFMPIHGEYRMLKIHTELAVDCDVDPDNTFIMENGE
VLALSANEAHVAGRIPSGDIYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSADMEKKKI
VSGPDIISRGFVYMRESGTMINEAQQMLNKHLRYTIQGKETEWAELKNEITDVLSPYLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgaccaaactgcagttttcgccctcggcggactaggcgaaatc
ggcaaaaacacatatggtgttcaatttcaagatgaaattattttaatcgatgctggtatt
aaatttccagaggatgacttactaggtattgattatgtaattcctgattacacttattta
gtaaaaaatgttgataagattaaaggattatttataacacatggtcatgaagatcatatt
ggtggtattccttatctattgaaacaaattaatgtaccagtttacggtggaaagctagca
cttggtttattacgaaataaattagaagagcacggcttacttcgtcaaacaaaaatgatt
gttattcaagaagaagatgttattaaatttagaaaaacttccgtaagtttctaccgtaca
acacatagtattccagatgcgtttggtattgttgtaaaaactccaccaggtaatattgta
cacactggtgactttaagtttgactttactcctgttggagaaccagctaatttaacaaaa
atggctgagattggtcgtgatggagttttatgcttactatcagatagtacaaatgccgaa
attcctaactttacaatgtctgagcgtaaagttggagaaagcatggattctattttccgt
aaagtagacggtcgtattatctttgctacttttgcatctaatattcatagacttcaacaa
gtaacagatgcggctgttctacatggtcgtaaaattgctgtatttggtcgaagcatggac
aatgctatgacgattggtcgtgaacttggctatattactgctcctaaagaaacgtttgtg
gatgcaagtgcattgaatcgattaccggcaaatgaggtactgatcctttgtacaggtagt
caaggtgaaccgatggcagcattatcgcgtatcgctaacggtacacaccgacaaattcaa
attcaacctggagatacagtagtattttcttcttctcctatccctggaaatagagcaagt
gtcaatcgtacgattaatcttctattccgagctggagcagaagtaatccacggttcatta
aataatattcatacttctggtcatggctcacaagaagagaataagcttatgcttcgcctt
atgaagccgaagttctttatgccgattcatggagaatatcgtatgttgaaaattcataca
gagttagccgttgattgtgatgtagatccggataatacattcattatggaaaacggagaa
gtacttgccttaagtgccaatgaagcacatgtcgctggtcgaatcccttctggtgatatt
tatatcgacggaagtggaattggtgatattggtaatattgtccttcgtgatcgccgtatt
ttatcagaagaaggtttggtcattgttgttgtaagtgctgatatggagaagaaaaaaatc
gtatcaggtcctgatattatttcacgaggattcgtttatatgcgtgaatcaggaacaatg
attaatgaggctcaacaaatgttaaacaaacatttaagatacactattcaaggtaaagaa
acagagtgggcagaattgaaaaatgaaattacggatgtactaagtccatatttatatgaa
aagacgaaacgacgtccaatgatacttccaattattatggaagtctaa
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