Psychrobacillus sp. INOP01: KD050_19280
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Entry
KD050_19280 CDS
T09653
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KD050_19280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyb03019
]
KD050_19280
03400 DNA repair and recombination proteins [BR:
psyb03400
]
KD050_19280
Enzymes [BR:
psyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KD050_19280
Messenger RNA biogenesis [BR:
psyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KD050_19280
DNA repair and recombination proteins [BR:
psyb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KD050_19280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
P-loop_SecA
Lmo2445-like_C
Motif
Other DBs
NCBI-ProteinID:
QUG41389
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All DBs
Position
3925916..3927331
Genome browser
AA seq
471 aa
AA seq
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MNKLYEILQKKFGHANFREGQQEVIEQIIDGKDVVAILPTGMGKSLLYQLPAYLMEGTVI
IVSPLLSLMQDQVEQLKILGEKRVIAINSFLPFQERELAIRQLADYKFIFTSPEMLQNEQ
FNQALRNLSIAYVVADEAHCISQWGFDFRPDYLRISNWLHSLKTVNVLALTATATKEVVG
DIKKTLRMKKPFEYIHSLDRPAIAYEMVEVENHLEKMNWIIGRVTTTEGPGIIYTQSRKK
TEVYAEMLREQGISVAYYHAKMEQSDRILIQQQFQQGQLDWICATNAFGMGIHKDNIRQI
IHDHIPTSVAGYMQEVGRAARDGNQAIASLLYTSTDVDQTFYVAMQDFPEEQDIHIAYHS
EYSEVEQAETTARILTYWKEQLNEQETIQLFKQIKQKKWQDIQSFYSMIQNDICLRQQLL
HFFDQPLIEKPYYCCSKCKLDVSSILRKRSDEKNDQDELNWKDRLNSLLPS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattatatgaaattcttcagaaaaagttcggccatgcaaacttccgagaaggt
caacaagaagtaattgagcaaattatagatggaaaagatgttgtcgctatacttcctact
ggcatgggaaaatcccttctctatcagctaccagcttacctaatggaaggaactgtgatt
atagtctcgcctcttttatctcttatgcaggatcaagtggagcaattgaaaatactaggg
gaaaaaagagttattgccatcaattcatttttaccatttcaggaaagagaattggcgata
cgccagctagctgattataaattcatattcacttcaccagagatgctgcaaaatgaacaa
tttaaccaagcgcttagaaatctttccatcgcatatgtcgtggccgatgaagcgcactgt
atttctcagtggggatttgattttcgacctgattatttaagaatatccaattggttacat
tcactaaaaactgtgaacgttcttgcgttaacagcaactgcgacaaaagaagttgtgggg
gatattaaaaagactttacggatgaaaaaaccatttgaatacattcattcacttgatcga
cctgctattgcatatgaaatggtcgaggtagaaaatcatctagaaaaaatgaactggatt
ataggtagagtcaccacaacagaaggtccagggataatttatactcaatcacgtaaaaag
acggaagtttatgcagagatgctacgagaacaaggaatttctgttgcctattaccatgcc
aaaatggagcaaagtgaccggatattaatccagcaacagttccagcaagggcaattagat
tggatttgtgcgactaacgcctttggaatgggtatccacaaagataatattagacaaatt
attcatgatcatattcctacatctgtagcaggttatatgcaggaggttggtagggctgct
agagatggcaatcaagcaatcgcctctcttttatatacttctacggatgttgaccaaact
ttttacgtagctatgcaagactttccagaggagcaagacattcatattgcttatcactct
gagtattctgaagtcgaacaggcagagactacagcacgtattctaacttattggaaagag
caattaaatgaacaagaaactattcaattatttaagcaaattaaacaaaaaaagtggcag
gatatacaaagtttttactcgatgatacaaaacgatatttgtttacgtcagcagctacta
catttttttgaccaaccattgatagaaaaaccttactattgttgttccaaatgtaagtta
gacgtttcaagcatcttacgaaaaagatcagatgaaaaaaatgaccaagacgaattgaat
tggaaggatagactaaattctctcctcccatcttaa
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