Entry |
|
Symbol |
gyrB
|
Name |
(GenBank) DNA gyrase subunit B
|
KO |
|
Organism |
psyc Psychrobacter sp. DAB_AL43B
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Brite |
KEGG Orthology (KO) [BR:psyc00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:psyc03032]
DABAL43B_0004 (gyrB)
03400 DNA repair and recombination proteins [BR:psyc03400]
DABAL43B_0004 (gyrB)
Enzymes [BR:psyc01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DABAL43B_0004 (gyrB)
DNA replication proteins [BR:psyc03032]
Prokaryotic type
DNA Topoisomerases
DABAL43B_0004 (gyrB)
DNA repair and recombination proteins [BR:psyc03400]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DABAL43B_0004 (gyrB)
|
SSDB |
|
Motif |
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Other DBs |
|
LinkDB |
|
Position |
I:5143..7770
|
AA seq |
875 aa
MSDSLPTDHQQLTSDSVVETIAAAVVPEALPSDYSSKDIRVLRGLEAVRVRPGMYIGDTD
DGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAA
QVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYNQTYTDGVPD
SDIQQMEATDQTGTQIRFYPSHDVFTGTTFEYDILAKRLRELSFLNSGVRIVLTDERIDK
RHEFEHKGGLSEFVSYINAGKDGVNDVFHFISNQDDGISVEVALQWTDTYNEKVLCFTNN
IPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKF
SSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAARKAREMT
RRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN
VERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLT
FFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDSTKLHINADA
PAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDMTYDKSAMEAWKES
LQIQLNHFGSDLYPEIELVNIHAPVSATMDAVTADLLGMKPQPEPQLAIEGESVSSGDAL
STKAQWLPRITVYVHQLAHHYLLDASFINSSEYSKLLRLSAEWNTLLDDSAFIRRESTSG
TNKDIPIRDFDYLWQQMMLEARRGLAVQRYKGLGEMNADQLWDTTMDPENRRMLRVTIED
AIAADHMFTCLMGDHVEPRRIFIEENALTVSNLDI |
NT seq |
2628 nt +upstreamnt +downstreamnt
atgagtgattcattacctaccgaccaccagcaactaacgtcagacagcgtagttgagact
attgccgccgctgtcgttcctgaagcattaccctctgattatagctcgaaagatattcgt
gtactgcgcggattagaagcagtgcgcgtgcgtcctggcatgtatatcggtgataccgat
gatggtaccggcttgcatcatatggtttttgaggtagtggataactctatcgatgaagcg
cttgccggtcattgtgaccagattgatatcatcattcacgaagatgaatctgtgagcgtc
atggataatggtcgcggcgttcctgtggatattcatccagaagagggtgtgtctgcagca
caggtcattatgacggtactgcatgctggtggtaagtttgatgacaacagttataaagta
tctggcggtttacatggcgtcggtgtttcggttgttaacgccttatctaaaaagcttgag
atgaatatctggcgcgaaggctatcattataatcagacttataccgatggtgtgccggat
agcgatatccagcagatggaagcgacagatcaaacgggtacgcaaatccgtttttatcct
agtcatgatgtgtttacgggcactacctttgagtatgatattttagccaagcgtttacgt
gagctgtcatttttaaactcaggtgtacgtattgtgctaactgatgagcgtattgataag
cgtcatgagtttgagcataaaggtggattgtctgaatttgttagctacatcaatgctggt
aaagatggcgtcaacgatgtatttcatttcatcagtaatcaagatgacggtatcagtgtc
gaggttgccctacagtggacggatacttataacgaaaaagtgctgtgctttaccaataat
attccgcaaagggatggcggcacgcatttatcaggctttcgctcagcgttaacgcgttgt
ttgaatacctatatggaccgtgaaaacctcttcaaaaaagagaaagtggttgcgactggt
gatgatgctcgtgaaggtttaacagctattgtatccgttaaagttcctgatcctaagttt
tcgagtcaaactaaagataagctggtatcaagcgaagtaaaatcagcggtcgaatcagca
atgcatgataagtttaatgattatctgcaagagaatcccagcgctggtaaattgattgcc
ggtaaaattattgatgccgcgcgtgctcgtgatgcggctcgtaaagcgcgtgagatgact
cgccgtaagactactctagatatcgcaggtttaccgggtaagttggcggattgccaagaa
aaagatccggcattatcagagctatacatcgtggaaggggattctgctggcggttcagcc
aagcaaggtcgtagccgtaaaactcaggcgattttaccattaaaaggtaaaatcttgaac
gttgagcgcgcgcgttttgataaaatgctatcgtctgctgaagtcggtaacctaattact
gcgcttggttgtggtattggtcctgatgaatataatcctgataaagtgcgttatcataaa
attattatcatgaccgatgcggacgttgatggatcacatattcgtacgttgctattgact
ttcttcttccgtcaaacacctgaattgattgaacgtggttatatttatatcgcgcagcca
cccctttataaagtgaaaaaaggtcgtcaagagctgtacctaaaagacgatgaagcgcta
aaagcgtatttattatcatcaacgattgatagtactaagttgcatatcaatgctgatgca
cctgcgattactgggcaagcgcttgagacgttgctgaatgattataaccaaacacagctg
attaaagcgcgtctgcaaattcgttatccagcggtattactcgacgcattgacgcatacg
ccgaagcttagcactgatatgacttatgataagtcagcgatggaagcatggaaagagtcg
ttacagatccagcttaatcacttcggtagtgatttatatcctgagattgaattggttaat
atccatgcgcccgtatctgcaactatggatgcagtcactgctgacttgttaggtatgaaa
ccgcagccagaaccacaattagccattgaaggtgagtctgtttctagtggtgatgcgctc
tcaacgaaggcgcaatggttaccacggataacggtttatgtgcatcagctagcacatcat
tatctgcttgatgccagctttatcaactcaagcgaatacagcaagctactgcgtctatcc
gctgagtggaatactttgctcgatgacagcgcctttatccgacgcgaaagtacgtcagga
actaataaagatattccaatacgtgactttgattacctatggcagcagatgatgctagag
gcacgtcgcggtctggcggttcagcgctataaagggctgggcgagatgaacgctgatcag
ctttgggataccactatggatcctgaaaatcgtcgtatgctacgcgtgacgattgaagat
gctattgcagctgaccatatgtttacctgcttgatgggtgatcatgtcgagccgcgccgt
atctttattgaagaaaatgcgctgacggtttctaatttagatatatag |