Psychrobacter sp. DAB_AL43B: DABAL43B_0334
Help
Entry
DABAL43B_0334 CDS
T04748
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psyc
Psychrobacter sp. DAB_AL43B
Pathway
psyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DABAL43B_0334 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyc03019
]
DABAL43B_0334 (rne)
03009 Ribosome biogenesis [BR:
psyc03009
]
DABAL43B_0334 (rne)
Enzymes [BR:
psyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DABAL43B_0334 (rne)
Messenger RNA biogenesis [BR:
psyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DABAL43B_0334 (rne)
Ribosome biogenesis [BR:
psyc03009
]
Prokaryotic type
rRNA processing factors
DABAL43B_0334 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
SLJ83549
UniProt:
A0A1U6GJ44
LinkDB
All DBs
Position
I:complement(379883..384253)
Genome browser
AA seq
1456 aa
AA seq
DB search
MKRILINATQNEEIRVALCKGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GSQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLA
GRYLVLMPNNPRGGGISRQISGKLREDMKRMLGSLDLPKGMSVIIRTAGIGKTQEDLQHD
LNHLLNIWQAIQEQNQKYPSPRLVHQEAGVVTRAVRDYLRDDIAEIWIDNENAYIEAAGF
IDAVMPTQAEKLRKYTDYEPMFSRFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDI
NSAKSTKGSDVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLI
DATKYDRARVQFGDISKFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIM
RQIEQIALKERQGEVQAEVPTDIAAFLLNEKRDALVYLEQDSGTRITILPHAHLESPNFK
LHFNRDGFAPSSYERITDTQQQEYSELGYNVDWQTAEKERPEQQPTRQPRSVADNSTSSS
QAPARTNAQPSTPEQQQNSTSHSNEHRNNTNTNTNTNTNTNNVSSARAPQPQNTPNVATT
SVPVAAPSANVAAAQPQAVAWLSNLFAQAPQAQTTNSISSRDAAEAIEALVNTGAQSLGS
FGQVDNSALNDASQSASAPQQNNSQPSNNNGQRQQTRHTDNATDDSNTGDSSDAEDRRRR
KPRKSRPSKPRQRKEQADETDNSAANNTTDSSPISTDDKADNQDKRQQDNRRPSDRNRNN
RQDNRQNASERNVSESNASENDSNNSNETKAAEEQTRAKRKSNSQRSSRGKLDRGETLTT
AKSQQSNQQSNKDVNGSKTQSNARRNQDPNEVVLQVNAAATELKAAEVVHLSLDDSKSVP
ATRQVTAKHHSVNDSNVADTAKERQENTAQQHADKQTAVEQSIIQPSSDINSDSTASTQN
SSTQAHAAENSDALVDEAKVDEVKISATDNKAQKPVSTDDSKGDDEKPLVAEQATSKSST
DNQADNAAHEQKSVEIKAEDIAPVAEAQKVEADDNRIDTDQVDTNQVAIDASSNNHSALE
LTHDALFAKRYITAAKFGQASNDPRVVRQQQAQSQATQASQIDKKDEQAIVSVPTIRGTV
GEFIRATLPEAESRLAADGVINCFNAAVALHLEQAHVQIVVNDKVANTNDNQRATGETAN
NNFDFSNYGYQPLAADYLARFEAMTQAVSQFAATQGKTDVEPRTIDKRASNDPRGQHPDY
QEPVVLAVSDEPINESGQADSEIDAHKVEATVLANPAQAAEVSTESEQLLQVEQALEKVT
TEQTEVEVTPEAKTTKDEAADVNDVEIEETNINTEVNVEAAEVKDANLEQSETEQPTESI
VEPSTKEEIQAAKSKTTIASYKNMIENVAEQLLPQKGMFNLTTPKVPKARTRKPKAEHKK
PTQAEKSESDNSDSDS
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcattttgatcaacgctacccaaaacgaagaaattcgtgttgccctttgcaaa
ggcaaccatctgtacgatttcgatttagaaaaccgtacccgcgaacaaaaaaaatccaac
atctataaaggtcatgtgacccgtgtcgagccttcgcttgaagccgtttttgtagagtat
ggctcacagcgtcaaggctttttgccgattcgtgaaatttctgccgaatatttaagtggc
aatccacgtgacgaaaacatcaaaaaactaatcaaagaaggtgacgagctcatcgtccaa
gttgaaaaagaagagcgcggtaataaaggtgcagccctgtcgacttatgtgtcattagca
ggacgttatcttgtcttaatgccgaacaaccctcgcggtggcggtatctcgcgtcaaatc
tcaggtaaattacgcgaagatatgaaacgcatgctaggcagtcttgatttgccaaaaggc
atgagcgttatcattcgtactgctggtattggtaagacccaagaagatttacaacacgat
ttaaatcatttgcttaatatctggcaagccatccaagaacaaaaccaaaaatatccatca
ccgcgcttggttcatcaagaagcgggcgtggttacgcgtgctgtccgcgactatctacgc
gatgatattgctgagatttggatcgataacgaaaacgcctatatcgaagccgctggtttt
atcgatgcggtcatgccaacacaagcagaaaaactgcgtaaatataccgattatgagcca
atgttttcgcgctttaatattgaaaagcagattgaaaccgcttatcagcgcgaagttcgc
ttgccatcgggtggctcaatcgttatcgatcaaactgaagcgttagtttctatcgacatc
aactctgctaaatctaccaaaggctcagacgttgctgagaccgcttatcataccaatcta
gaagcggctgatgagattgctcgtcaattacgtctacgtgatatgggcggcctaattgtc
attgatttcattgatatgaatgacaataagcatcaaaaagaagttgaaaaacgtctgatt
gatgccactaaatatgaccgtgcccgtgtacaatttggtgatatttctaaatttggtttg
atggagatgagccgtcaacgcctgcgtccatcactagaagagtcaaccggctatatctgc
ccgcgttgtcacggcaacggtatgattcgtgacctgcgttcattatcattatctataatg
cgtcagattgaacaaatcgcgcttaaagaacgtcaaggtgaagtccaagcagaagtaccg
actgatatcgcagctttcttattaaatgaaaagcgcgatgccttagtttatctagagcaa
gacagtggtacgcgtatcaccatcttgccacacgcgcatttagagtcgccaaactttaaa
ctccactttaaccgcgatggctttgcgccatcaagctatgagcgtatcaccgatactcag
cagcaagaatatagcgagcttggctataacgttgattggcaaacagccgaaaaagagcgt
cctgaacagcagcctacccgccaaccacgctcagtagcggacaacagtaccagcagcagt
caagcaccggctcgtactaatgcacaaccgagcacgcctgagcagcagcagaatagcacc
agtcatagtaatgagcatcgcaacaataccaataccaataccaataccaataccaatacc
aacaatgtttcgtcagcacgtgcgccgcaaccacagaacaccccaaacgttgcgaccact
tctgttccagtagcggctccatctgctaatgttgctgcggcccaaccgcaagcagtcgct
tggttgtctaatttgtttgcccaagcgccgcaggcacagactacaaacagtatcagtagc
cgtgatgcagctgaggccattgaagcgcttgtaaataccggcgcgcaaagtctaggctcg
tttggacaagtggataacagtgcgttaaatgatgctagtcaaagcgcatcagcacctcag
caaaacaatagccaaccgtcaaacaataacggtcagcgtcagcagacacgtcataccgat
aacgctactgatgatagtaatactggcgatagtagcgacgctgaagatagaagaagacgc
aagccacgcaaatcaagaccatctaagccacgccaaagaaaagagcaggcagatgaaact
gataatagtgccgctaacaatacgactgacagcagcccaattagcactgatgataaagct
gacaaccaagataaacgtcagcaggataatagacgccctagtgatcgcaaccgcaacaat
cgccaagacaaccgtcaaaatgcaagcgagcgcaatgttagcgaaagcaatgcctctgaa
aatgatagcaataatagcaatgagaccaaagccgcagaagagcaaactcgtgctaaacgc
aaatcaaatagccaacgtagctcacgcggcaaactcgatcgcggtgagacgttaacaacg
gctaagagccagcaaagcaaccaacaaagtaataaagatgttaacggtagcaaaactcaa
tccaatgcccgtcgtaatcaagatcctaacgaagttgtattgcaggtcaatgcagctgcc
actgaactcaaggcagcagaagttgtgcacttgtctttagatgacagtaaatctgtacca
gcaacacgtcaggtgacagcaaagcatcattcagtaaatgatagcaatgtcgctgatacc
gcaaaggagcgtcaagaaaacactgctcagcagcatgctgataagcagaccgcggtcgag
caaagtatcattcagccgtcatctgatataaacagcgactctactgctagtacgcaaaac
agcagtacgcaagcccatgctgctgaaaatagcgatgctttagtagacgaagcaaaagta
gatgaggtaaagataagcgctactgacaacaaagcgcaaaaacctgtctcgacagacgac
agtaaaggcgacgatgaaaaacccttggtagctgagcaagcaacctcaaaaagtagcact
gataaccaagctgacaatgcggctcatgagcaaaaatcagtagagatcaaagcagaagat
atcgcgccagtagcggaagctcaaaaggtagaagctgatgataaccgcattgatactgac
caagttgatactaaccaagtcgcaatcgatgctagtagcaacaatcactcagcgcttgag
cttactcatgacgcgttgtttgctaaacgctacattacagccgctaaatttgggcaagcc
agtaatgacccacgcgtggtacgtcaacagcaggcgcaatcacaagctactcaagcgtcg
cagatagataagaaagatgaacaagccattgtgagcgtaccgaccattcgtggtacggtt
ggtgagtttatccgtgcgactctaccagaggctgaaagtcgcttagccgcagacggtgtc
attaactgctttaacgctgccgttgctttgcatctagagcaggcacacgttcaaatcgtg
gtaaatgataaggttgcaaacaccaacgacaatcaacgtgctactggcgaaactgccaat
aacaattttgattttagcaactacggctatcaaccattagcagcagattatctcgcacgc
tttgaagcgatgacacaagctgtcagtcagtttgcagcaacgcaaggtaaaacagacgtg
gagccgcgcaccatcgataaacgggcaagcaacgacccacgtggtcagcatcctgattat
caagagccagtagtattggctgtttctgacgagccgatcaacgaatcagggcaagctgat
agcgagattgatgctcacaaagtagaagcgacggtgctggcaaatccagcgcaagcagct
gaggtcagtactgagagcgaacaactgctacaggtagagcaagcgctagaaaaagtaacc
actgagcaaactgaggttgaagtcactcctgaggctaaaactacgaaggatgaagctgct
gacgtcaacgatgtggaaatcgaagagactaacatcaatactgaagtcaatgttgaagct
gctgaggttaaagatgctaacctcgagcaaagcgaaactgagcagcctactgaatcaata
gtagagccatctacgaaagaggaaattcaggcagcaaagtcaaaaacgacgatagccagt
tataaaaatatgattgaaaacgtggccgagcaactgctaccgcaaaaaggtatgtttaat
ttaacaacccctaaggtgccaaaggctcgcactcgtaagcctaaggctgagcataaaaag
ccgacgcaagctgaaaaatcagagtccgataattcagatagcgacagctaa
DBGET
integrated database retrieval system
