Psychrobacter sp. DAB_AL43B: DABAL43B_0978
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Entry
DABAL43B_0978 CDS
T04748
Symbol
rtcB3
Name
(GenBank) RNA ligase (ATP)
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyc
Psychrobacter sp. DAB_AL43B
Brite
KEGG Orthology (KO) [BR:
psyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyc03016
]
DABAL43B_0978 (rtcB3)
Enzymes [BR:
psyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DABAL43B_0978 (rtcB3)
Transfer RNA biogenesis [BR:
psyc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DABAL43B_0978 (rtcB3)
Prokaryotic type
tRNA splicing ligases
DABAL43B_0978 (rtcB3)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
SLJ84176
LinkDB
All DBs
Position
I:complement(1130106..1131338)
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AA seq
410 aa
AA seq
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MQPTTHDIIQDGGTPIRLWTKGVPVDPKAHDQLIKASQMPFIYKWLAVMPDVHVGIGATI
GTVLPTKEAIIPAAVGVDIGCGMMAVQTTLTAEDLPDNLLGLRTELEKAIPHGRSKTRGR
GSRRDVGAWSNPDDTVMDGWGTLVDDFNYITQKHPRLKNTNNLLHLGTLGTGNHFVEVCL
DETNQVWIMLHSGSRGVGNAIGRYFIELAREDMRKWFINLPDKDLAYFAEGTEHFDDYWF
AVGWAQRFAFKNREIMMEKAIKALRQIVPKPFNAAVKAVNCHHNYVAKEEHYGEEIFVTR
KGAVRARVGEYGIIPGSMGAKSFIVRGKGNEESFCSCSHGAGRVMSRTQAKKEFTVADQI
AQTEDVECRKDADVIDEIPAAYKNIDDVMQAQSDLVEVVHTLRQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaaccactcacgatattattcaggatggtggaacccctatcaggctttggaca
aaaggcgtccctgttgacccaaaagcccatgaccagcttatcaaagcctcgcaaatgccc
tttatttataaatggttggcagtaatgcccgatgtgcatgttggtattggcgcgactatc
ggtacagtattgccgaccaaagaagcaattatcccagcagcggtcggtgtcgatatcggt
tgcgggatgatggcggtgcaaactaccctaaccgctgaggatttgcccgataacttgcta
ggtctgcgtactgagctggaaaaagcgattccgcatggtcgtagcaaaacccgtggtcgc
ggttcacgtcgtgatgttggcgcatggtcaaaccctgatgatacggtaatggatggctgg
ggaacgctggttgatgactttaattatataacccaaaagcatccacggttaaaaaacacc
aataacttgctgcatctaggaacgctaggtacgggtaaccactttgtagaagtgtgcttg
gatgagaccaatcaagtgtggattatgctgcactcaggctctcgcggtgtgggaaatgct
atcggtcgctactttattgagctggcgcgtgaggatatgcgtaagtggtttattaacttg
cctgataaagacttggcttactttgccgaaggtaccgagcactttgatgattattggttt
gcggttggttgggcacaaagattcgcttttaaaaaccgtgagatcatgatggaaaaagcg
attaaagccttgcgccaaatcgtgccaaagccgtttaacgcagcggtcaaagcagtgaac
tgtcatcataactatgtggcgaaagaagagcattacggtgaagaaatcttcgttactcgt
aaaggcgcggtacgggctcgcgttggtgaatacggtatcatccccggctccatgggcgca
aaatcctttattgtccgtggtaaaggtaatgaggaatcattttgctcctgctcacacggt
gctggtcgggtgatgtcacgaactcaggcgaaaaaagagttcacggtagccgatcaaatt
gcgcaaaccgaagacgtagaatgccgtaaagatgcggatgtgattgacgaaattccagca
gcgtataagaatatcgatgacgtaatgcaagcgcaaagcgatttggtagaagtggtgcat
accttgcgtcaggtagtttgtgttaagggatag
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