Psychrobacter sp. DAB_AL43B: DABAL43B_1014
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Entry
DABAL43B_1014 CDS
T04748
Symbol
dnaQ3
Name
(GenBank) bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
KO
K14159
ribonuclease HI / DNA polymerase III subunit epsilon [EC:
3.1.26.4
2.7.7.7
]
Organism
psyc
Psychrobacter sp. DAB_AL43B
Pathway
psyc03030
DNA replication
psyc03430
Mismatch repair
psyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DABAL43B_1014 (dnaQ3)
03430 Mismatch repair
DABAL43B_1014 (dnaQ3)
03440 Homologous recombination
DABAL43B_1014 (dnaQ3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyc03032
]
DABAL43B_1014 (dnaQ3)
03400 DNA repair and recombination proteins [BR:
psyc03400
]
DABAL43B_1014 (dnaQ3)
Enzymes [BR:
psyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DABAL43B_1014 (dnaQ3)
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
DABAL43B_1014 (dnaQ3)
DNA replication proteins [BR:
psyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DABAL43B_1014 (dnaQ3)
RNase H
DABAL43B_1014 (dnaQ3)
DNA repair and recombination proteins [BR:
psyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DABAL43B_1014 (dnaQ3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_H
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
SLJ84212
UniProt:
A0A1U6GL17
LinkDB
All DBs
Position
I:complement(1173468..1175168)
Genome browser
AA seq
566 aa
AA seq
DB search
MSDNRTSAQQLNTNNAMNPLAAKPDTTVAYTDGACKGNPGAGGWGAHLIFSDGRTQDLYG
GDNETTNNRMELMGAIQALKHSPHGQNLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKP
VANQDLWQQLDELCQPRDVDWHWVKGHTGHAGNEKADELANLGVTSSSEDLSTVDTQDTA
KKKEQIVSDKKPSTNDDWLKFDPLGFDMMDDELDEELSDDHMVVSQILEKQTLESQISES
HILDNYGDDKNHVDDMMHRSDIVEANRYQDNASKPTTTTDIPEAQTFMTDTTINANMPNI
HTDIEATIDTETPKFDGDTSRANPHFKPLLPQPINRHESDRQLIMDTETTGLDPLKGDRI
VEVGIVEMVGRKFTGEKLHVYINPQRGMDEEVIRIHGISEAFLTDKPTFDQVAQSLYDFM
DGAEVIAHNATFDMNFLNMEFAKVGMHDFAERVKVTDSLVMAKQQYPGQKNTLDALVRRL
DVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLAIEEDTQADGGHTAHASFANLAALLLE
SSTDESANQSWYATLAEDYPELKAKM
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatcgtacctcagcgcagcaacttaataccaacaacgctatgaatccatta
gctgccaaaccagacacaacggttgcctatacggacggtgcatgtaaaggtaaccccggc
gctggcggttggggcgcgcatcttatatttagtgacgggcgtacccaggatttgtatggt
ggcgataacgagacgaccaataatcgtatggagctgatgggtgcgatacaagcattaaaa
catagcccacatgggcaaaaccttgagatttggacagactcaagctatgtaaaaaaaggt
atcaccgaatggattgagggttggaaaaaacgaggctggaaaacagccagtaaaaaacca
gtcgccaatcaagacctttggcaacagttggacgagctttgccaaccacgcgatgttgat
tggcattgggtcaaaggtcatactgggcatgctggcaatgaaaaggcagacgagctggca
aatttaggcgtgacgtccagtagtgaagatttatcgacagtagacacacaagataccgct
aaaaaaaaagagcaaatagtgtctgataaaaagccatccacgaacgatgattggctaaag
ttcgatccattaggttttgatatgatggatgatgagcttgatgaagaactatcagatgat
catatggtggtaagtcagatattagaaaaacagacgttagaaagccagatatcggaaagt
catatactggacaattatggtgatgataaaaaccatgtcgatgatatgatgcatagaagc
gatatagtagaagcaaatcgctatcaggataatgctagcaaaccaacgactaccacagat
ataccggaagcgcagacctttatgactgataccacgattaacgctaatatgccaaatata
catactgatatagaagctactatagatactgaaacgccaaaattcgatggcgatacgagc
cgtgccaatccacattttaaaccgctactacctcagcctatcaatcgtcatgagtctgac
cgccaactcatcatggatactgagaccacaggtcttgatccgttaaagggcgatcgcatt
gtcgaagtcggtattgtagagatggtcgggcgtaagtttaccggcgaaaagttacacgtc
tatatcaatccacagcgcggtatggatgaagaagttattcggattcacggtatttctgaa
gcctttttaaccgacaaaccaacctttgatcaagtcgctcagtcgctctatgactttatg
gacggtgcagaggtcatcgctcataacgccacgtttgatatgaatttcctaaatatggaa
tttgccaaggtgggtatgcatgactttgccgagcgggtaaaagtgactgactcgctggta
atggccaaacagcaatatcctggacaaaaaaacaccctagacgctctcgtacgtcgttta
gatgttggtaagcaagaccgtacttttcacggggcattactagactcagagattttagct
gaagtttatctggcgatgaccggcggacaggtcacactggcaattgaggaagacactcaa
gcagacggcggacacactgcccatgccagctttgccaatttggctgctttattgcttgag
tcgagtaccgatgagagcgccaatcaaagctggtatgctacgctcgcagaagactatcct
gagctaaaagccaaaatgtaa
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