Psychrobacter sp. DAB_AL43B: DABAL43B_1424
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Entry
DABAL43B_1424 CDS
T04748
Symbol
sbcC
Name
(GenBank) exonuclease SbcD
KO
K03546
DNA repair protein SbcC/Rad50
Organism
psyc
Psychrobacter sp. DAB_AL43B
Brite
KEGG Orthology (KO) [BR:
psyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyc03400
]
DABAL43B_1424 (sbcC)
DNA repair and recombination proteins [BR:
psyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DABAL43B_1424 (sbcC)
Archaeal homologous recombinant proteins
DABAL43B_1424 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
AAA_21
NTPase_1
ABC_tran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SLJ84620
UniProt:
A0A1U6GMC9
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All DBs
Position
I:complement(1622867..1626793)
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AA seq
1308 aa
AA seq
DB search
MRLIELRLKNLNSLKGEWHIDFSDAAFLNEGIFAITGQTGAGKTTILDAICLALYSQTPR
LGDITGSTNEIMTQGTGECSAEVIIEIDSKRYQCSWYQHRAHKKSKGNLLPIKHEISEVE
TGNILEEKKSKTSVYIQELIGMDFNQFTRSIMLAQGSFAAFLNSDIGDRAAILEKITGTA
IYAKISLNVHEKKRFEEEVLGKLQAGVNSLSLLSLDEEKLLAAELKALNQQQGKQRQTFK
TLGEQLQWLDSVKQLQQNLSAYQSEFASAQQVQQAFIPEAQRLEIANKALEMDSQFLELS
YSRNIVKRLDVEQQDLLNKIPNKKVALEHATTNLNDVEKLEKQAMDNLQITLPIIANTRV
LDADIKQQSHSLAEDNKRKDELVTNVQRLYQEIQNHEKIEHENKSQLASIEKYFSDYKEL
SDLDTDMAIFDSSCSRLKALLQDNVSLAIDKLAHDDQAKQLQADFDKLSAQQTLDKSRVQ
QQRKEITGLQQQQATLIQTQSIAGMRSEQEHIDQINTQIEQANFKLRQLSELASQIKSIN
LLLPTLNQELVTLEDLIASHKLDIQNTKLKRQDKQEHLNLLQKVAKLEDYIVELKDGSPC
PLCGAHEHPYSKNHPLLESNIDDKNQPSQTSQTQKTQQQVTELATLIESLEQTLSQYHID
HATKKEALNNQQALLTPLQQQSKTAYSDMQTYLSSLLDAKNDYSEPLIATINPLTQISEG
ININTTITDIDSFLSLLSSAKHSLIDQKQSLKANLLQYDDLTANISKLSSAIEVEDKRQQ
ALVSATSSLTTDIKLNSQKIEGIKDKIAANFSELTPIMSTVSSLVNKYPADKYKVYLSAD
MTRTDIQNALTPLSNSIDQQTVLDNADYDSHIDRLRQQRSALHQLKKYDNGQKNSQNQLT
NTLSSLTAQIETKQSQLTNDEMALKHLENLITDKISSIEKLTLDRKEWFEDKNPDNEEHQ
LRRTIDEAKAQQANAQRQLDNAQQALEQLQIRQQQLATELQSATTTLDIQQTKFTDLLAE
SQFVDEAAFVNARLTKEEREALHIRKLAIDNALQQAKLQLDSTQQSLDQKLATPMTDASR
EMLASQYHQIQTDIDQLSQQIGAIDQKLKDNASQKGEQAAQLIAINEQKQKLQVWQQLHT
LIGSADGKKYRTFAQGLTFEVMINHANDQLQKMSDRYLLIHDDSNPLELNVIDNYQGGDI
RSTKNLSGGEGFIISLALALGLSQMASHNIRVDSLFLDEGFGTLDEESLDIALDTLTSLQ
QEGKLIGIISHVQALKERILTQIKVEKLSGGFSQISGQGCRRVVSEKA
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctaattgaactaagacttaaaaacctcaactccttaaaaggcgaatggcacatt
gattttagtgatgctgcttttcttaatgaaggtatctttgctattactgggcaaacgggc
gctggcaagaccaccatattggatgcgatttgtttggcactatatagccaaacgccaaga
cttggagatattactggttcaacgaatgaaattatgacccaaggtacgggtgaatgctca
gcagaagtcatcatcgagatcgattccaagcgctatcaatgctcttggtaccaacatcgt
gcccacaagaagtccaaaggtaatttattaccgattaagcatgagatcagtgaagtcgaa
actggcaatattttagaagagaaaaaatctaaaacttccgtctatatccaagagttgata
ggcatggattttaatcaattcacccgctccattatgctagcacagggcagctttgcagca
ttcttaaattctgatattggcgatagagcggcaattttagagaagataacgggcactgct
atttatgccaaaatctcactcaacgtccatgaaaaaaaacgctttgaggaagaagtgctt
ggaaagctacaggcaggcgttaatagcttatctttattaagccttgatgaggaaaaactg
ctggccgcagagctcaaagcgcttaatcaacagcagggtaaacagcggcaaacctttaaa
acactgggcgagcagctacaatggctggatagtgttaaacaattacagcaaaacctatca
gcctatcaaagtgaatttgcatcagcgcagcaagtgcagcaagcctttattccagaggcg
cagcgtttagagatcgctaacaaagccttggaaatggacagtcagtttcttgagctgagc
tatagccgaaacatagtcaagcggctggatgttgaacagcaagatttgcttaataagatt
ccaaataaaaaagtagcgcttgagcatgcaactaccaatctcaatgacgttgaaaagctt
gaaaaacaagccatggataatcttcaaattaccctgcctatcattgcaaacacacgcgtg
ttagatgccgatataaaacagcaatcacattctttagcggaagataataagcgcaaggac
gaattagtcactaatgtgcagagattatatcaagaaatccagaaccacgaaaaaatagag
catgagaataaaagtcagcttgccagcatagaaaagtattttagcgactacaaagagctt
agtgaccttgacacagatatggcaatctttgatagtagctgtagccgattaaaggcactg
ctacaggataacgtaagcttagccattgataagcttgctcatgatgatcaagctaaacaa
ctacaggctgattttgataaactaagtgcccaacaaactctagataaatcacgagtgcag
cagcaacgtaaagaaattactggtctacaacagcagcaagcaacactcattcaaactcag
tcaattgctggtatgcgcagtgagcaagagcacatcgatcaaatcaacactcaaattgag
caagccaactttaagctgcggcagctgtctgagcttgccagccaaattaaaagcatcaac
ctattgctaccgacgctgaatcaagaattagtcactttagaagatttgattgctagtcat
aaattagatattcaaaataccaagcttaaaagacaagacaaacaagaacacttaaatcta
ctgcaaaaagtggctaagcttgaagattatatagtagaactcaaagatgggtcgccctgc
ccgctatgcggtgcgcatgaacatccttatagtaaaaaccatccgctattagaaagtaat
attgatgataaaaatcaaccctctcagacctctcagacgcaaaaaactcagcagcaggta
actgagcttgcgacgttaattgaaagcctcgagcaaacgttatcgcaatatcatattgac
catgccacaaagaaagaggcgcttaataatcaacaagcactattgacgcccctacagcaa
caatctaaaactgcatacagtgatatgcagacttatctatcctcactgcttgatgctaaa
aacgattactctgaacctcttatagcaacgattaatccgcttactcagattagtgaaggt
atcaatatcaatacaactatcactgatattgactcattcttatctttattgagcagtgcc
aaacacagccttattgaccaaaaacaatccctcaaagccaacctgcttcaatatgatgat
ctgacagcaaatatctccaaactaagtagcgctatcgaggttgaagataagcggcaacaa
gcacttgttagtgccacaagtagcctgacgactgacatcaagctcaactctcaaaaaatt
gaaggtatcaaagataagatagcagctaatttctccgagctaacgcctattatgagtacc
gtctcatctttggtgaataaatatcccgcggataaatataaagtatatttaagtgcagat
atgacaaggacagatattcaaaacgcactgacgccgctgagtaatagtattgaccagcaa
actgtactcgataacgcagactatgacagtcatatcgacagattgcgccaacagcgtagt
gcccttcatcagttgaaaaaatatgacaatgggcaaaaaaacagtcaaaaccagctaact
aataccttaagtagtttgaccgcccagattgaaaccaaacagtctcagcttactaatgat
gagatggcactcaaacatttagaaaacttaattactgataaaatcagctcgattgagaaa
ctaacactagacagaaaagagtggtttgaagataagaacccagataatgaagaacatcaa
ttgcgccgaacaattgatgaagcaaaagctcagcaagcaaatgcacaaagacagttagat
aatgctcagcaagcgttagagcagttacaaattaggcaacaacagctagcgacagaattg
caatctgctactacgacgttagatatacagcaaactaagtttactgacttattagcagag
tcacagtttgtagatgaagctgcctttgtcaatgcacgcctaacaaaggaagaacgtgag
gcactacatatacgtaaactggctattgataacgcgctgcaacaggctaaattgcaatta
gatagcacccagcaatcgttagatcaaaaacttgcgacgcctatgacagatgcaagccga
gaaatgcttgccagccaataccatcaaatccaaacggacattgatcagctaagtcagcag
attggcgctatcgatcaaaagctcaaagacaatgccagccaaaaaggcgaacaagcggca
cagcttattgccatcaatgagcaaaaacaaaagctgcaagtttggcagcagctgcataca
ttaattggttcagctgatggtaaaaaatatcgtacctttgctcaagggttaacctttgaa
gtcatgattaatcatgccaacgatcaactacaaaagatgagtgaccgttacttgctcatc
catgatgatagcaatccacttgagctcaatgtcattgataattatcaaggcggcgatatt
cgcagcactaagaatctttccggcggtgaaggttttatcattagcttggcactcgcgctt
ggattgtcgcagatggccagtcacaatattcgcgtggattcactatttttggatgaaggc
tttggtacacttgatgaagagtcgcttgatatcgcgctcgataccttaaccagcttacaa
caagaaggtaagcttatcggtattatctcccatgtgcaggcattaaaagaacgtatcctc
acccaaattaaagttgaaaagctatctggcggctttagccaaatcagtggtcaaggatgc
cgtcgggttgttagtgaaaaagcatga
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