Psychrobacter sp. DAB_AL43B: DABAL43B_1717
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Entry
DABAL43B_1717 CDS
T04748
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psyc
Psychrobacter sp. DAB_AL43B
Pathway
psyc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psyc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DABAL43B_1717 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyc03021
]
DABAL43B_1717 (rpoD)
Transcription machinery [BR:
psyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DABAL43B_1717 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
SLJ84912
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All DBs
Position
I:1982317..1984257
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AA seq
646 aa
AA seq
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MSDASKRVFMNDKSVSKSTSQLATLIQMGKEQGYLTYAEVNDQLPDSITESDQIEDIVQM
LTDVGIKIFESAPDADDILMNDESSDDESAADEAAAVLAAVETDPGRTTDPVRMYMREMG
TVDLLTREGEIVIAKRIEEGIRDVQHAMSYWPGTVQFVLDEYQKVQDGDKKLSDVITGFL
DPETEADKIAAQEAKEAAKEERERIKEEKENPPVIKAKAKAARDDDDEDEDETEEEAEEE
TSGIDPEEVRLRLEEIENLFIKAKQALLDYGRGSTEADEAYEQLAVRFMMLKLNNRLSDQ
VMAIMHDVYDDVRKQERQIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAFAG
TLEKVTDDVILLQRKILDYEQQLDMKIHDMKDVARRMAIGEAKARRAKKEMVEANLRLVI
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
TIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISME
TPIGDDEDSHLGDFIEDGTISSPVDDATAAGLREATRDVLSNLTEREARVLKMRFGIDMP
TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgcaagtaagcgagtatttatgaacgataagtcagtttctaagtccacatct
caactggccaccttaatccaaatgggtaaagagcaagggtacttaacctatgctgaggtg
aatgaccaactccccgactctatcactgaaagtgatcagatcgaagatatcgtacaaatg
ctaacggacgttggcattaaaatttttgaatctgctccagacgccgatgacatcttgatg
aacgatgagtcaagcgatgatgagtcagcagcagatgaggcagcagccgtattagcagca
gttgagaccgatcctggtcgtacgactgaccctgtgcgtatgtatatgcgcgaaatgggt
accgttgatctactaactcgtgaaggcgagattgttattgccaaacgtatcgaagaaggt
attcgtgatgtacagcatgcgatgtcttactggccaggtacggtacagttcgtccttgac
gagtatcaaaaagtacaagatggcgacaagaagctctctgacgtcatcaccggttttcta
gatcctgaaaccgaagcagacaaaatcgctgcccaagaggcaaaagaggctgcgaaagaa
gaaagagaacgcatcaaagaagaaaaagaaaatccgcctgttatcaaagcaaaagccaaa
gcggcgcgcgatgatgatgacgaggacgaagacgaaactgaagaagaagccgaagaagaa
accagcggtatcgatccagaagaagtacgcttacgtctagaagagatcgaaaatctattt
atcaaagccaaacaagccttgcttgattatggtcgtggtagcacagaagctgatgaagcc
tacgagcaacttgctgtacgctttatgatgctaaaactgaacaatcgcctatcagatcaa
gtaatggcgattatgcatgatgtctatgatgatgtgcgtaagcaagagcgtcaaatcatg
cgtttggtcattcgccgtggtcgtatgccgcgtgaagagttccgtaaaaccttccctagt
aatgaaaccaacgtcgattggttgattgagcgtatcaaaggcaagcctgcatttgctggc
accttagaaaaagtcaccgacgacgttattttattacagcgtaagattcttgattacgag
cagcagctcgatatgaaaatccacgacatgaaagatgtggcgcgccgtatggctatcggt
gaagcaaaggctcgccgtgccaaaaaagagatggtcgaagctaacctacgtctggttatc
tctattgcgaaaaaatataccaaccgtggtctacagttcttggatctcattcaagaaggt
aatattggtctgatgaaagcggttgataaatttgaatatcgccgtggttacaagttctca
acctatgccacatggtggattcgtcaagcaattacccgctctatcgctgaccaagcgcgc
accattcgtattcctgtgcatatgattgagacaattaacaaaatcaaccgtgtctcacgt
caattgctacaagaaatgggacgcgagccgacgcctgaagaattaggcgaacgcttagag
atggacgaagttaaagtccgtaaagtgctaaaaattgccaaggagcctatctcaatggag
acgccaatcggtgatgatgaagactcgcacctaggtgatttcatcgaagatggtactatc
tcaagccctgttgacgatgcgacagctgcaggtctgcgtgaagccactcgtgatgtgctt
agcaacctgactgaacgtgaagcgcgcgtgctaaaaatgcgcttcggtatcgatatgcca
accgatcatactctagaggaagtcggtaagcagtttgatgtaacgcgtgagcgtattcgt
cagattgaagcaaaagcgctacgcaaattacgtcatccttcacgttctgagcatttacgc
tctttccttgaaaatgactaa
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