Psychrobacter sp. DAB_AL43B: DABAL43B_2608
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Entry
DABAL43B_2608 CDS
T04748
Symbol
rho
Name
(GenBank) Transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
psyc
Psychrobacter sp. DAB_AL43B
Pathway
psyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DABAL43B_2608 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyc03021
]
DABAL43B_2608 (rho)
03019 Messenger RNA biogenesis [BR:
psyc03019
]
DABAL43B_2608 (rho)
Transcription machinery [BR:
psyc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DABAL43B_2608 (rho)
Messenger RNA biogenesis [BR:
psyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DABAL43B_2608 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
SLJ85786
LinkDB
All DBs
Position
I:3062858..3064126
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AA seq
422 aa
AA seq
DB search
MNLTELKKKSIAELLAIAKEMGLDNMARSRKQDIIFAILKTHARNGEAIYGDGVLEVLPD
GFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEIN
FDTPDRSRHKLIFENLTPLFPTEHLKLELGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPP
KAGKTMLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMVRTVRGEVVASTFDEPPQRHV
QVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVLTGGLDANALERPKRF
FGAARNIEEGGSLTIIASALIDTGSKMDSVIFEEFKGTGNQEITLERDLAEKRVFPAINI
KKSGTRREERLLDEDKLRKVWILRKLLQPMDGVQATEFLLDRLKEAKTNDEFFEQMKRKS
QN
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaactgaattaaagaaaaaatcaatcgctgagctattggccatcgccaaagaa
atgggtcttgataatatggcacgtagccgtaaacaagacattatctttgctattttaaaa
acccatgcccgtaacggtgaggccatctatggtgatggtgtgcttgaagtgctcccagat
ggttttggctttttgcgctcatcagaaggctcttacttagcaggtcctgacgacatttat
gtcagcccgagccaaattcgccgctttagtcttaagacaggcgacagtatcgctggcacg
attcgtccacccaaagactctgagcgttattttgcgctattaaaagtcggcgaaatcaac
tttgataccccagatcgctcgcgtcataagcttatttttgaaaacctaacgccgctattt
ccaaccgagcatctcaagcttgagcttggtaacggcacgactgaagatttgaccggtcga
attattgatctgattgcccctatcggtaaaggtcagcgctccattatcgttgccccgcca
aaagccggtaaaacgatgctcctacagaccatcgcccaatccatcacacgtaacaatcct
gaatgctatttgatcgtcttactaatcgatgagcgtccagaagaagttaccgaaatggtg
cgtacggtacgcggtgaagtggttgcctcaacctttgatgagccgccacagcgtcatgtg
caggttgcagagatggtcattgaaaaggcgaagcgtttggtcgagcataaacaagacgtg
gtcattttacttgactctattacccgtcttgcccgcgcctataacaccgtcattccttca
tcaggtaaagtgttgaccggtggtcttgatgccaatgcgttagagcgtccaaaacgtttc
ttcggtgctgctcgtaacattgaagaaggtggtagtttgaccattattgccagtgccctt
atcgataccggcagtaaaatggacagcgttatctttgaagagtttaagggaacaggcaac
caagagattacccttgagcgtgatttggctgaaaaacgagtcttcccagcgatcaatatc
aaaaaatctggtacacgccgcgaagagcgcttgcttgatgaagataagctacgtaaggtt
tggattttacgtaaattgctacagccgatggatggcgtacaagcgactgaattcttatta
gatcgtttaaaagaagccaagaccaatgacgaattctttgagcaaatgaaacgtaaatca
caaaattaa
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