Psychroflexus sp. ALD_RP9: IMZ30_00220
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Entry
IMZ30_00220 CDS
T09874
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
psyd
Psychroflexus sp. ALD_RP9
Pathway
psyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMZ30_00220 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyd03019
]
IMZ30_00220 (rny)
Messenger RNA biogenesis [BR:
psyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IMZ30_00220 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH-I_KHDC4-BBP
FtsX
KH_KhpA-B
KH_2
PRD1_DD
DUF3169
MS_channel_1st_1
Motif
Other DBs
NCBI-ProteinID:
QSS97179
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Position
45970..47535
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AA seq
521 aa
AA seq
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METIIITIIAAIIGLVIGFLISKMLEKNSAKGIVNSANKDAEKILKEAKKEGESIKKDKI
LQAKEKFIELKAEHEKVITSRDKKIADAEKRTKDKESQLSHELSKNKKLNASLDEKLEDY
ANRTEYLAKRQEEIDKILNQKIKQLEVISGLSAEEAKEQLMESLKETAKSEAMTLIQDTV
EEAKLTAQQEAKKIIINTIQRIGTEEAIDNCVSVFNLESDDVKGRIIGREGRNIRAIEAA
TGVEIIVDDTPEAIILSCFDSVRREIARLSLHRLVTDGRIHPARIEEVVKKTSKQIDEEI
AEIGKRTIIDLGIHGLHPELVKAVGRMKYRSSYGQNLLQHSREVAKLCGVMASELGLNPK
LAKRAGLLHDIGKVPETETELPHAILGMQWAEKYGEKDEVCNAIGAHHDEIEMNSLLSPI
VQVCDAISGARPGARRQVLDSYVKRLKDLEDIAFGFSGVKKAYAIQAGRELRVIVESEKV
NDDRAGSLSFEISQKIQTDMTYPGQVKVTVIRETRAVNVAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaataataattacaattatagcagcaataatcggtcttgtcatcggtttttta
atatctaaaatgctagaaaaaaacagtgcaaaaggcattgtaaattcagcaaataaagac
gctgaaaaaattttaaaagaagctaagaaagaaggtgaaagcatcaaaaaagataaaatt
cttcaagctaaggagaagtttattgaactcaaggcagaacacgaaaaagttattacttca
cgtgataaaaaaatagccgatgcagaaaaacgaacaaaagataaagaatctcagctctct
cacgaattgtctaaaaataaaaagttaaacgcttctttagatgaaaaattagaagattac
gctaaccgaactgaatatttagcaaaacgtcaagaagagatcgataaaatattaaatcaa
aaaataaaacagctcgaagtcattagcgggcttagcgctgaagaagccaaagaacagttg
atggaatcgcttaaagaaacagcaaaatctgaagcgatgacacttattcaagatactgtt
gaagaagccaaacttactgcccaacaagaagctaaaaaaatcataataaatacaatacag
cgcatcggaactgaagaagctatagataattgtgtttctgttttcaatcttgaaagcgac
gacgttaaaggacgtattataggtcgtgaaggacgaaatattagagcaattgaagctgct
actggtgtcgaaattattgtagatgacacacctgaagccattattttatcttgctttgat
tctgtaagacgtgaaatcgctagattatctcttcatcgattagtaactgatggtagaatt
caccctgcaagaattgaagaagtggttaaaaaaaccagtaaacaaattgatgaagaaatt
gctgagattggtaaacgcacaattattgatcttggaatacatggtttacatccagaactt
gtaaaagctgttgggcgaatgaaatatcgttcttcttatggccaaaaccttcttcaacac
tcacgtgaagtagctaaactatgtggtgtgatggcatctgaactaggcctaaatcctaaa
ttagctaaacgcgccggcctacttcatgatattggtaaagtgccagaaacagaaaccgaa
ttacctcacgcaattttaggaatgcaatgggctgaaaagtatggagaaaaagacgaagtt
tgcaatgccattggtgctcaccatgatgaaattgaaatgaactcacttctctcacctatt
gttcaggtttgtgatgctattagcggtgcaagacctggcgctcgccgtcaagtcttagat
tcttatgtgaagcgtctaaaagaccttgaagatattgcttttggatttagtggggttaaa
aaagcttacgctattcaggctggacgtgaattacgagtaattgtagaaagcgaaaaggta
aatgatgaccgcgctggaagtctatcctttgagatctcccaaaaaatccaaaccgacatg
acgtatcctggtcaagttaaagtcactgtaattagagagacacgagccgtaaacgtagca
aaataa
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