Psychroflexus sp. ALD_RP9: IMZ30_06585
Help
Entry
IMZ30_06585 CDS
T09874
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyd
Psychroflexus sp. ALD_RP9
Pathway
psyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMZ30_06585 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyd03400
]
IMZ30_06585 (mfd)
Enzymes [BR:
psyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMZ30_06585 (mfd)
DNA repair and recombination proteins [BR:
psyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IMZ30_06585 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QSS96129
LinkDB
All DBs
Position
complement(1398452..1401829)
Genome browser
AA seq
1125 aa
AA seq
DB search
MSKTNISTALANSANFKQLINALQAEEKGVAPKFKLDHLVGSAVSFYMAECFKKLDQPFL
LIFDDKEEAAYHLNDLEQLLGDEQVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRK
KPSVIVTYPEALFEQVVTKSELNKSILKLKLEDQLSIDFVNEVLFEYKFKRVDFVTEPGE
FSVRGGIIDVFSFSHDEPYRIEFFGDEVESIRSFDIETQLSTERHKKVSIMPNVENKALD
EKRQSFIEYISNHSLIILKSPDLLAKQLDLLFEKAQTAFEQLSQQVKHAQPAELFCNAAL
IMQQLEAYPIIQLNGQTYFSATTHLNFDTKPQPAFNKKFDLLVENLKEYSNAGFTNYICC
ATEQQAKRFKDILSEIDDNLSYQTSVLPLHQGFVDVNAKILCYTDHQVFDRYHKFHLKNG
YAKKQAITLKELTSLEVGDYVTHIDHGIGQFGGLQKIDVEGQKQEAIKLVYGDRDVLYLS
IHSLHKISKYNGKEGKAPKIYKLGSKAWKSLKKKTKTKVKQIAFDLIKLYAKRKLDKGYQ
YAPDSYLQHELEASFIYEDTPDQGAATEAVKADMESQQPMDRLVCGDVGFGKTEVAIRAA
FKAVDNGKQVAVLVPTTILAFQHHKTFSERLKDFPVTVDYLNRFRTAKERRQVLEELEAG
KIDIVIGTHQLVNKNVKFKDLGLLIIDEEQKFGVSVKDKLKTIKANVDTLTLTATPIPRT
LQFSLMAARDLSTIKTPPPNRYPIETHVIRFTEDQIRDAVAYEIQRGGQVFFINNRIENI
KEVAGMIQRLVPDAKIGVGHGQMDGKKLEQLMLAFMNNEFDVLVSTTIIESGLDVTNANT
ILINDAHNFGISDLHQMRGRVGRSNKKAFCYLITPPTSLMTPDARKRITALEQFSELGSG
FNIAMKDLEIRGAGDLLGGEQSGFIADIGFDTYQKILNEAIDELKENEFKEVYEDEQNSV
DTVFVKDAQIDTDFEILFPDDYINSVKERLSLYTKLNEISTEADLQAFEAELIDRFGALP
VPTQDLLDSVRLKWIAASMGLEKLVLKKEQLIGYFIADQQSPFYQTSRFREVLQHVQTHP
KQFVLKEKETRQGLRLLLKSTQVSSIKKAYELLKPLQISPKEKAH
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaccaatattagtacagccctagccaattcagctaatttcaagcaattaata
aatgcgcttcaagctgaagaaaaaggcgtcgcaccaaaatttaaacttgaccatttagtg
ggctcggcggtttctttttacatggccgaatgtttcaaaaaactcgaccaaccattttta
cttatttttgatgacaaagaagaagcggcttatcatttaaatgatttagaacaattgctc
ggtgatgaacaagtattattttatcctggctcttatcgtcgaccataccaaattgaagaa
accgacaacgctaatgttctgctcagagctgaagttttaaaccgcattaattcgcgtaaa
aaaccatcagtcatcgtgacttatcctgaagctttgtttgaacaagtggtgactaaatct
gagctgaacaaaagtattttaaaacttaaactggaagaccaattatcaatcgattttgtt
aatgaagtcttgtttgaatacaaatttaaacgcgttgattttgtaactgaacctggcgaa
ttttctgtgcgtggcggtattattgatgtgttttcatttagccatgacgaaccttaccgc
atcgagttttttggagacgaagttgaaagtattcgcagttttgatatcgaaactcaactc
tcaacagagcgacacaaaaaagtgtcgattatgccgaatgttgaaaataaagccctagat
gaaaaacgccagagctttattgagtatatttcaaatcacagcttgatcatacttaaatcg
cctgatttactcgccaagcaattagaccttctatttgaaaaagcccaaacggccttcgaa
caattaagccagcaagtaaaacatgcccaaccagccgaattgttttgcaacgcggcactc
atcatgcaacaacttgaagcttacccaattattcaacttaatgggcaaacttacttctca
gcaacaacacatttaaattttgacacgaaaccgcagccagccttcaataaaaaattcgat
ttactggttgaaaacctcaaagaatacagcaacgcaggctttaccaactatatttgctgt
gctaccgaacagcaagccaaacgctttaaagatattttaagcgaaatagacgacaactta
agttaccaaacttcagttttaccgctacaccaaggttttgttgatgtcaatgccaaaatt
ttatgttacaccgatcatcaagtttttgatcgctatcataaattccaccttaaaaatggt
tatgccaaaaagcaagccattacactaaaagagcttaccagcttagaagtaggcgattat
gttacgcatattgatcatggcatcgggcagtttggtggcttgcaaaaaattgatgtagaa
ggtcaaaagcaagaagccattaagctagtgtatggcgatcgtgatgtgttgtatttgagt
atccattctttacataaaatctctaaatacaacggtaaagagggcaaagcacctaaaatt
tataaattaggaagcaaagcttggaaaagcctaaagaaaaaaactaaaactaaggttaag
caaattgcctttgatttaattaaactatacgccaagcgaaaattagacaaaggttatcaa
tatgcgccagactcgtatttacagcacgagcttgaagcttcttttatttatgaagacaca
cccgaccaaggcgccgcaactgaagctgtaaaagctgatatggaaagtcaacagccgatg
gaccgattggtatgcggagatgttggctttggtaaaactgaagtcgctattagagctgct
tttaaagcggttgataatggcaaacaagtcgcggttttagtgccaaccacgattttagcc
tttcaacaccataaaaccttttctgagcgcttaaaagattttcccgttacggttgattac
ctcaaccgttttagaaccgccaaagaacgccgtcaggttttagaagaactagaagctgga
aaaattgatatcgtgatcggtacgcatcaattagtcaataaaaacgtcaagtttaaagat
ttaggcttattaattattgatgaagaacaaaagtttggggtttctgttaaagacaaactc
aaaaccattaaagctaatgtagatactttaaccttaaccgctacacctattccgcggaca
cttcaatttagtttaatggccgctagggatttatcaaccattaaaacaccaccgcccaat
cgctacccgattgaaacccatgtaattcgcttcaccgaagatcaaatacgggatgccgta
gcttatgaaattcaacgtggtgggcaagtcttttttatcaataaccgcatcgaaaatatt
aaagaagtcgctgggatgattcaacggcttgtacctgatgccaaaattggtgtcgggcat
ggccaaatggatggtaaaaaactcgaacaactcatgttggcgtttatgaataatgagttt
gatgtattggtctctaccaccattatagaaagcggcctagatgtgaccaatgccaatacc
attttaatcaatgatgcccataattttgggatatcagacctgcaccaaatgcgcggtcgc
gtaggccgaagtaataaaaaagccttttgttacttaattacgccacctacgagcttaatg
acacctgatgcccgtaaacgcatcaccgctttagagcagttttcagaattgggcagcggc
tttaatattgccatgaaagatttagaaattcgtggtgctggcgacttattaggtggtgaa
caaagtggctttattgctgatatcggctttgacacctaccagaaaatcttaaatgaagcc
attgatgaattaaaagaaaatgaatttaaagaggtgtatgaagacgaacaaaatagtgtt
gatactgtttttgtaaaagatgcacaaatagataccgattttgaaattttatttcctgat
gattacatcaatagcgtcaaagagcgtttaagcctttacaccaagcttaatgaaatttca
actgaggctgacttacaagcctttgaagccgaacttatcgaccgttttggtgcgcttcca
gtaccaacccaagatttactcgattcggtacgccttaaatggattgctgctagtatgggc
ttagagaaattggtcttaaaaaaagagcaattaattggctacttcatcgccgaccaacaa
tcgcctttttaccaaacctcacgttttagagaagtcttacagcatgtgcaaacgcatcct
aaacaatttgtcttaaaggaaaaagaaacccgacaaggtttacgtttattactcaaaagc
acccaagttagcagtattaaaaaagcttatgaattattgaagcctttacaaatatctcct
aaagaaaaagcgcactaa
DBGET
integrated database retrieval system
