Psychroflexus sp. ALD_RP9: IMZ30_09795
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Entry
IMZ30_09795 CDS
T09874
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyd
Psychroflexus sp. ALD_RP9
Pathway
psyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMZ30_09795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyd03019
]
IMZ30_09795
03009 Ribosome biogenesis [BR:
psyd03009
]
IMZ30_09795
Enzymes [BR:
psyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMZ30_09795
Messenger RNA biogenesis [BR:
psyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMZ30_09795
Ribosome biogenesis [BR:
psyd03009
]
Prokaryotic type
rRNA helicases
IMZ30_09795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSS96731
LinkDB
All DBs
Position
complement(2068258..2070006)
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AA seq
582 aa
AA seq
DB search
MNTFESLGLSQEILEAVKDMGFESPSEVQEKTIPILLEEPTDMVALAQTGTGKTAAFGFP
LIQNINLNSKSTQGLILSPTRELCLQITNELKSYAKHYKSLNTVAVYGGASITDQAKQIK
KGAQIIVATPGRMKDMIRRNIIDISKIDICILDEADEMLNMGFFEDIKEILSHSPATKNT
WLFSATMPKEVAQIAKKFMHNPKEVTIGKKNVSTKNVSHEYFIVAGRDRYNAMKRLVDAN
PDIYAVVFCRTKRDTQKVAERLIEDGYSASAIHGDLSQNQRDLVMKSFRSKSIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKEGTSMVIITKSEIRKIKQVERI
IGQNFEAKELPSGDEICKVQLLHLAKEVHNTEINHDIDPYVDQLESQFEDVSKEDLIKKF
FSVEFTRFHNYYKNAPNLANPSEDRSSNSGANYGDETRFFINVGEKDGFNWMSLKDFLKE
TLDLGRDAVARVDVKNTFSFFNVPNDDVEKVKALFEDFKLFGRHVNVEITKDKKKSGGGF
RGKRSNKRHSNSKGSGKRDFKSGGRNRDRSVNKSIERRRKKQ
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatttgaatcattaggcttaagccaagaaatcttagaagcagtaaaagatatg
gggtttgagtcaccaagtgaagtacaggaaaaaaccattcctattttacttgaagagcca
actgatatggttgcgctagcccaaacaggtacaggaaaaactgctgcattcggctttcca
ttaattcaaaacattaatcttaattccaaaagcacgcaaggtttaattttgtcgcctact
cgcgagctttgtttacaaattacaaatgagttaaaatcttatgctaagcactacaaaagc
cttaacactgttgcagtttacggtggtgcgagtatcacagatcaagcaaaacaaattaaa
aaaggagcacaaattattgtagccacacctggacgaatgaaagatatgattcgtcgaaac
atcattgatatttctaaaatagatatttgcatcttagatgaagctgatgaaatgcttaac
atgggcttttttgaagatatcaaagaaattttatcacactcaccagccacaaaaaacacc
tggttatttagtgcaactatgccaaaagaggttgcacaaattgctaaaaagtttatgcat
aacccaaaagaagtgaccattggtaagaaaaacgtgtctactaaaaatgttagtcacgaa
tattttattgttgctggtcgtgacagatataatgcaatgaagcgtttggtagatgccaat
cctgatatttatgccgttgtattttgtagaactaaacgcgatactcaaaaagtagcagaa
cgtttaatagaagatggctattcagcctcagcaattcacggagatttaagccaaaatcaa
cgtgatttggttatgaaaagcttccgatcaaagtcaatacaaatgcttgtagctacagac
gtagcagcccgaggaattgatgtagacgatattacacatgttatcaattaccaattacct
gacgaaattgaaacttatacacaccgtagcggtcgtacaggtcgtgcaggtaaagaaggt
acttcgatggtaattatcacgaaaagtgaaatacgtaaaattaaacaagttgaacgtatt
attgggcaaaattttgaagcaaaagagttaccttctggtgatgagatttgtaaagttcaa
ttactacatttagctaaagaagttcacaatactgaaatcaatcacgatatagatccttat
gtcgatcaactagaatctcaatttgaagatgtttcaaaagaagatttgataaaaaaattc
ttttcagttgagtttacacgttttcataattactataaaaacgcccctaatctagcaaat
ccttctgaagatcgcagttctaacagtggcgcaaattatggtgatgaaacacgatttttt
ataaatgtcggtgaaaaagatggcttcaactggatgtctctaaaagactttttaaaagaa
acacttgatttaggccgcgatgcagtagcaagagttgacgttaaaaacacattttcattt
tttaatgtcccaaacgacgacgttgaaaaggtaaaagctttatttgaagattttaaacta
tttggcagacatgttaatgttgaaatcacgaaagataaaaagaaatctggcggaggtttt
agagggaaacgctctaacaagcgtcattctaacagcaaaggttcaggaaaacgtgatttt
aaatctggtggcagaaatagagatcgcagcgtaaacaaatcaattgaacgtcgacgcaaa
aaacagtaa
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