Psychroflexus sp. ALD_RP9: IMZ30_10160
Help
Entry
IMZ30_10160 CDS
T09874
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
psyd
Psychroflexus sp. ALD_RP9
Pathway
psyd03030
DNA replication
psyd03430
Mismatch repair
psyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMZ30_10160
03430 Mismatch repair
IMZ30_10160
03440 Homologous recombination
IMZ30_10160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyd03032
]
IMZ30_10160
03400 DNA repair and recombination proteins [BR:
psyd03400
]
IMZ30_10160
Enzymes [BR:
psyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IMZ30_10160
DNA replication proteins [BR:
psyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IMZ30_10160
DNA repair and recombination proteins [BR:
psyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IMZ30_10160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
DEDDh_C
DUF7508
DNA_pol_A_exo1
CpeT
GIY_YIG_domain
T5orf172
Motif
Other DBs
NCBI-ProteinID:
QSS96801
LinkDB
All DBs
Position
complement(2151552..2152916)
Genome browser
AA seq
454 aa
AA seq
DB search
MYAILDIESTGGKYNEEGITEIAIYKHDGHEIVDQFISLVNPERKIQSFVVGLTGINNEM
LRNAPKFYEIAKRIIEITEDCVIVAHNAKFDFRMLQLEFDRLGYQFERKSLCTIKLAELL
LPDLKSYSLGKLVKALGIPITNRHRASGDALATVKLFELLLEKDQNKKIVSSLINTHKKT
KKTKKLIRLSDNLPNKTGVYYFYNDEGEIIYIGKSKNIKKRVQQHFTNQSHKSRKIQEEV
TSISFDLTGNELVALLKENHSIKSLKPKYNKALKKDIFNYGLYQFTDHKAYINFSIHKST
KQKDLITTFVNLQQAKKFMATQVEAFQLCPKLSGLEQTNGPCFSYGIKKCEGACIEKISA
ENYNRNASSFIKKFSLEKNSFIIVDRGKNPNEKSIIVVKKGELMGYAFTQLNHQKSFKIL
KELLTPLKSDRDAKHILQAYLRKKGKHVKIEPLE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgcaatcttagacatagaatctacaggaggtaaatacaacgaagaaggtattact
gaaattgctatttacaagcatgatggacatgaaattgtcgatcaattcataagtcttgta
aatcctgaacgcaaaattcagtcctttgttgttggtcttacaggtattaataacgaaatg
ctgcgaaatgccccaaaattctacgagattgcgaaacgtataattgaaataactgaagac
tgcgtcattgtagctcataatgctaaatttgattttagaatgcttcagctggagtttgac
cggttaggctatcaatttgagcgtaaaagtttatgtactataaagcttgctgagttactc
ttacccgatttaaaatcttatagcttagggaaattagttaaagccttaggcataccaatt
accaataggcatcgagctagtggtgatgctttagccactgttaaactttttgaactttta
ttagaaaaagaccaaaataaaaaaatagtttcttctttaataaacacgcataaaaaaaca
aagaaaacaaaaaaattaattaggcttagtgacaacttacctaacaaaactggtgtttat
tatttttataatgatgaaggagaaataatttatattggtaaaagcaaaaacataaaaaaa
agagttcagcagcatttcacaaaccaaagtcataaatctcgtaaaatccaagaggaagta
acatcaatatcatttgacttaacaggtaatgaacttgtagcgttattaaaagaaaatcac
agcataaaaagtcttaaaccgaaatataacaaagcacttaagaaggatatttttaactat
gggctttatcaattcactgatcataaagcctacattaattttagtattcacaaatctacc
aaacaaaaagacttaattaccacttttgtaaaccttcaacaggctaaaaaatttatggct
actcaagttgaagcgtttcaattatgtccaaaattatcaggacttgaacaaacgaatggt
ccatgttttagctacggtattaaaaaatgtgagggtgcttgcatcgaaaaaatatcagct
gaaaactataatagaaatgcatcaagtttcattaaaaagtttagtctagaaaaaaacagt
tttattattgttgatcgtggtaaaaaccccaatgaaaaatcgatcattgtcgttaagaaa
ggagaattaatggggtatgcatttactcagcttaaccaccaaaaatcattcaagatacta
aaagaattacttactcctttaaaaagtgatcgagatgcaaagcatattttacaagcttat
ttaagaaaaaaaggtaaacatgttaaaatagaacccttagaataa
DBGET
integrated database retrieval system
