Psychroflexus sp. ALD_RP9: IMZ30_11095
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Entry
IMZ30_11095 CDS
T09874
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psyd
Psychroflexus sp. ALD_RP9
Pathway
psyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMZ30_11095 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyd03021
]
IMZ30_11095 (rho)
03019 Messenger RNA biogenesis [BR:
psyd03019
]
IMZ30_11095 (rho)
Transcription machinery [BR:
psyd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IMZ30_11095 (rho)
Messenger RNA biogenesis [BR:
psyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IMZ30_11095 (rho)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSS96973
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All DBs
Position
2357777..2359522
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AA seq
581 aa
AA seq
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MLEINELKAKKLPELQDIAKELEVPKFKSLKKLDLIYQILDYQASNPEKVKSVVLSESSP
AKASSSKSKSKAQSDSKNESPKKNTKTNENKTAAKVSDESKSTEDKNTKRQRQKTASNQS
KSENSNQTKSNKNSQQQTSAKEKEDANQKNNQSSKQSQKQNSKSEQNQKKSSDSKNDASQ
KRSSHQSNQKSNQKNGNKDTRNKYKQPNYEFDAIIESEGVLDMMPDGYGFLRSSDYNYLS
SPDDIYLSQSQIKLFGLKTGDTVLGQVRPPKEGEKYFPLIKINKINGLDPQVVRDRVSFE
HLTPLFPKERFRIADRSSSISTRVMDMFAPIGKGQRGMIVSQPKTGKTMLLKDIANAIAA
NHPEVYQIVLLIDERPEEVTDMQRSVRGEVVASTFDKEAHEHVKVANIVLDKAKRLVECG
HDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALHKPKRFFGAARNIENGGSLSIIA
TALTDTGSKMDEVIFEEFKGTGNMELQLDRKIANRRIFPAIDLTASSTRRDDLLLDQDMV
QKMWVMRKYLADMNPVEAMEFISERIKQTKNNEEFIISMNG
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgttagagattaatgaattaaaggcaaaaaaactgcctgaattgcaagatattgctaaa
gagctagaagtaccaaagtttaagagtttaaaaaaattagatttaatttaccaaattctt
gattatcaggctagcaatcctgaaaaggttaaatctgttgttttatctgaatcgagtcct
gcaaaagcttcatcttcaaaaagcaaaagtaaagcacagtcagattcaaaaaacgaatct
cctaaaaaaaatacaaagacgaatgaaaataaaacggctgctaaggtttcagatgaatct
aaatctactgaggataaaaacactaagcgacaaagacagaagacagcttcaaaccaatct
aagtctgaaaattctaatcaaacaaaatctaataaaaattctcagcaacaaacttcagcc
aaagaaaaggaagacgctaatcaaaaaaataatcagtcttctaaacaatcacagaagcaa
aattcaaaatcagagcaaaatcaaaaaaagtcttcagactctaaaaatgatgcttctcag
aagcgttcgtctcaccaatctaaccagaaatctaatcagaaaaacggtaacaaagacacc
agaaataaatataaacaaccaaattatgaatttgatgcgattatagaatctgaaggtgta
ctagatatgatgcctgatggctacggttttttacgttcatcagattataattatttatca
tctcctgatgatatttatctttctcaatctcaaataaaattatttggattaaaaacaggt
gatactgttttaggtcaagttagaccacctaaagaaggtgaaaaatattttcctttaata
aaaatcaataaaattaacggtcttgacccacaagttgtgcgtgatcgtgtttcttttgaa
catttaacgccattatttcctaaagagcgttttagaatagcagaccgaagctcttcaatt
agcacgcgagttatggacatgtttgcaccaattggtaaagggcaacgtggtatgattgta
tcacagccaaaaacaggtaaaacaatgttgcttaaagacattgccaatgctattgcagca
aaccatcctgaagtttatcaaattgtattgttaattgatgaacgtccagaagaagtgacg
gatatgcagcgaagcgttcgaggtgaagtagtcgcttcaacttttgataaagaagcacat
gaacatgttaaagtagctaatatagttcttgataaggctaagcgattagttgaatgtggt
catgatgtggttattttattagactcaattacgcgtttagctagagcttataatacagtt
cagccagcaagtggtaaagtgttaagtggcggagtagatgctaatgctttacataaacca
aagcgctttttcggtgcggctcgaaatattgaaaatggaggctcactttcaataattgct
acagctttaacagataccggctcaaaaatggatgaagttatttttgaagagtttaaagga
actggaaatatggagctacagttagaccgtaagattgctaaccgacgtattttccctgca
atagacttaacggcatcgagtacaagacgagatgatttattactcgatcaagatatggtt
caaaaaatgtgggtaatgcgaaagtatttagctgatatgaatcctgtagaagctatggag
tttataagtgaacgcattaagcaaactaaaaataatgaagaatttatcatttctatgaat
ggttaa
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