Desulfovibrio mangrovi: N1030_02950
Help
Entry
N1030_02950 CDS
T08614
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1030_02950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyf03019
]
N1030_02950
Enzymes [BR:
psyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N1030_02950
Messenger RNA biogenesis [BR:
psyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N1030_02950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UZP67952
LinkDB
All DBs
Position
633101..634540
Genome browser
AA seq
479 aa
AA seq
DB search
MSFARLSLHQSLLEAVEEQGFIAPTPIQERAIPPAKEGRDVLGLAQTGTGKTAAFVLPLL
DRLVEGPRNVVRALIVAPTRELAGQIHDDIRMLGRRARLRSVPVFGGVGFHGQVMQMRGG
AEILVACPGRLLDHVRQGTVDLSAVEVLVLDEADMMFDMGFLDDVREILRLTSGRNQTLL
FSATMPEPVRVLADECMRDPVLVEVDISTPAETVSHSLYPVAPHLKTPLLKAMLRTLGYE
SMLVFTRTRHGARRLWQQLGKVGFNVTCLQGNLSQRRRQAALDGFKRGKFAIMVATDIAA
RGLDISSISHVINYDFPPSVDTYIHRIGRTGRASRTGMALTFVTPEDEALVRTLERAMEE
TLERCYLPRFEYSEQQRSAEARPAKLRRVPRPRRMARAFMPTQVEKEPAEPLRNQRPPRQ
PAPNPAQVRVISRPQPKPPVQPEKPEMRPASRAVAKQAPTPRGPRHTVQETREAQEQDD
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
gtgagtttcgcccggttgtctttgcatcagtccctgcttgaggcagtggaagagcagggg
ttcattgcccccacgcccattcaggaacgagccattcctccggccaaggaaggcagagat
gtgctcgggctggcccagaccggcacgggaaagactgcagcatttgtcctgcccttgctg
gacaggctggtggaagggccgcgcaatgttgtccgtgcgctcatcgttgccccgacacgg
gagctggccggacagattcacgacgatatccgcatgctcggccgcagggcgcggttgcgc
agtgtgcctgttttcggcggtgtgggattccacggacaggtcatgcagatgcgggggggc
gcggagattctggtcgcctgtcccgggcgtctgctcgaccatgtacgacaggggacggtt
gatctttccgccgtggaagtgctggtgctcgatgaagcggacatgatgtttgacatgggc
tttctggatgatgtgcgcgagattctgcgcctgacatccggcaggaatcagacgctgttg
ttttccgccaccatgcctgagcctgtgcgcgtgcttgcggatgagtgtatgcgtgatccc
gtgctggtggaagtggatatttccactcctgccgagaccgtttcacattccctgtatccg
gtggcgccgcatctgaagactccgttgctcaaggccatgctgcggacgctggggtatgaa
tccatgctcgtgttcacaagaacccgtcatggcgcgcggcggctctggcagcagttgggt
aaggtggggttcaatgtcacctgcctgcagggtaatctttcccagcgcaggcggcaggcg
gctctggatggcttcaaacgcggcaagttcgccatcatggtcgcaacggatattgcggca
agagggcttgatatttcctccatttcccatgtcatcaactacgattttcccccgtcagtc
gatacctacatccatcgcatcgggcgcaccggcagggcaagccgtacgggtatggcgttg
acctttgtcacgcctgaggatgaggctctggtgcgcacgttggaacgcgccatggaagaa
acgctggaacgctgctacttgccccgttttgaatacagcgaacagcagcgaagcgcggaa
gcacgtccggccaaactcaggcgcgtgccgcgtccccgtcgtatggcccgtgccttcatg
cccacgcaggtggaaaaggaaccggccgaaccgctcagaaaccagcgcccgccgaggcag
ccggctcccaaccccgcacaggtgcgcgtcatatcgcggccgcaacccaagccgccggtg
cagccggaaaagccggaaatgcgtccggcatcgcgtgccgtggccaagcaggccccgact
ccccgcggccctcgtcatactgtgcaggaaacccgcgaagcgcaggaacaggacgactag
DBGET
integrated database retrieval system
